Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99607 * 2 1 4 4 H 1.48502 * 109.46692 * 269.99560 * 3 2 1 5 5 H 1.48493 * 109.47140 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.46852 * 150.00309 * 3 2 1 7 7 C 1.37873 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99825 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.47480 * 110.99907 * 74.02784 * 10 9 7 12 12 C 1.53515 * 87.93050 * 138.70117 * 11 10 9 13 13 C 1.47486 * 110.99674 * 169.99818 * 10 9 7 14 14 H 1.09004 * 113.47436 * 336.12280 * 13 10 9 15 15 C 1.53001 * 113.47646 * 106.52615 * 13 10 9 16 16 C 1.53775 * 113.61524 * 279.14063 * 15 13 10 17 17 C 1.53965 * 87.01916 * 220.04474 * 16 15 13 18 18 C 1.53773 * 113.61454 * 181.52772 * 15 13 10 19 19 H 0.97001 * 120.00310 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47596 * 59.99524 * 9 7 2 21 21 H 1.08997 * 109.46971 * 299.98802 * 9 7 2 22 22 H 1.09004 * 113.47564 * 253.46110 * 11 10 9 23 23 H 1.08993 * 113.47671 * 23.93538 * 11 10 9 24 24 H 1.09004 * 114.17359 * 220.32704 * 12 11 10 25 25 H 1.09003 * 114.34519 * 87.63133 * 12 11 10 26 26 H 1.09005 * 112.84550 * 50.33542 * 15 13 10 27 27 H 1.09004 * 113.61689 * 334.56099 * 16 15 13 28 28 H 1.09001 * 113.61706 * 105.47012 * 16 15 13 29 29 H 1.08994 * 113.53732 * 270.81249 * 17 16 15 30 30 H 1.08994 * 113.66593 * 139.92779 * 17 16 15 31 31 H 1.09004 * 113.61794 * 254.53275 * 18 15 13 32 32 H 1.08995 * 113.61652 * 25.43636 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 2.8372 -3.7710 1.3242 12 6 2.6866 -5.2895 1.1560 13 6 1.5187 -4.8985 0.2397 14 1 0.5699 -4.7915 0.7655 15 6 1.4064 -5.7723 -1.0113 16 6 0.2487 -5.3716 -1.9407 17 6 -0.0006 -6.8769 -2.1468 18 6 0.6578 -7.0943 -0.7741 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8895 21 1 0.6242 -2.5567 0.8904 22 1 3.8748 -3.4381 1.3522 23 1 2.2409 -3.3633 2.1404 24 1 2.3858 -5.8116 2.0644 25 1 3.5181 -5.7690 0.6393 26 1 2.3583 -5.8961 -1.5279 27 1 -0.5661 -4.8603 -1.4279 28 1 0.5727 -4.8541 -2.8437 29 1 0.5659 -7.3025 -2.9750 30 1 -1.0564 -7.1460 -2.1722 31 1 1.3115 -7.9658 -0.7365 32 1 -0.0448 -7.0550 0.0583 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885274459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = 23.869631 kcal Electronic energy + Delta-G solvation = -12473.816369 eV Core-core repulsion = 10434.813517 eV Total energy + Delta-G solvation = -2039.002852 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22479 -38.60500 -35.09120 -31.52572 -28.42954 -27.48120 -26.29528 -23.93168 -23.60506 -20.52865 -20.22944 -18.51881 -17.07629 -16.67437 -16.28389 -15.75352 -15.34029 -14.56522 -14.22933 -13.75074 -13.29760 -13.06253 -12.98147 -12.81773 -12.74417 -12.38101 -12.31280 -12.04058 -11.58267 -11.36309 -11.29973 -10.89379 -10.67642 -10.55201 -9.54362 -8.26208 -6.37400 1.36388 1.38681 1.49929 2.36245 3.06074 3.27311 3.61463 3.82186 3.90735 3.96243 4.14209 4.34522 4.42110 4.63248 4.74016 4.83339 4.89647 4.90399 4.93984 4.99905 5.03244 5.07370 5.12662 5.19954 5.37515 5.41393 5.55975 5.69041 5.79840 6.14812 6.50391 6.78806 7.32787 8.85443 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.049938 B = 0.009138 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.557335 B = 3063.229198 C = 3432.428785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.182 3.818 10 N -0.483 5.483 11 C 0.003 3.997 12 C -0.116 4.116 13 C 0.028 3.972 14 H 0.050 0.950 15 C -0.089 4.089 16 C -0.148 4.148 17 C -0.128 4.128 18 C -0.119 4.119 19 H 0.265 0.735 20 H -0.002 1.002 21 H -0.033 1.033 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -12.930 0.085 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.055 3.945 10 N -0.205 5.205 11 C -0.126 4.126 12 C -0.153 4.153 13 C -0.082 4.082 14 H 0.068 0.932 15 C -0.108 4.108 16 C -0.186 4.186 17 C -0.165 4.165 18 C -0.157 4.157 19 H 0.074 0.926 20 H 0.016 0.984 21 H -0.016 1.016 22 H 0.093 0.907 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.977 -12.670 -0.527 13.025 hybrid contribution -0.674 1.478 0.638 1.746 sum 2.303 -11.191 0.112 11.426 Atomic orbital electron populations 1.70086 1.07767 1.27999 1.51515 1.25969 0.95826 1.03390 0.94556 0.85348 0.78533 0.77986 0.78550 1.19760 1.20342 1.18850 1.21430 0.93446 0.91433 1.50551 0.92405 1.19783 0.90975 0.90488 0.93291 1.68833 1.21803 1.01856 1.28046 1.23514 1.00366 0.97005 0.91738 1.23132 0.98081 0.94487 0.99615 1.23395 0.96297 0.91983 0.96526 0.93196 1.22405 0.98099 0.95638 0.94632 1.22911 0.98581 0.97726 0.99406 1.22828 1.01427 0.94143 0.98144 1.22820 0.99103 0.96426 0.97351 0.92581 0.98361 1.01576 0.90733 0.93628 0.89105 0.87765 0.88969 0.92779 0.93265 0.88910 0.90815 0.89371 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.44 0.28 -57.74 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.68 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.53 -31.74 8.95 25.60 0.23 -31.51 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.18 10.28 4.58 85.56 0.39 10.67 16 10 N -0.48 -22.18 6.19 -906.64 -5.61 -27.80 16 11 C 0.00 0.12 7.30 83.58 0.61 0.73 16 12 C -0.12 -3.45 8.01 30.94 0.25 -3.20 16 13 C 0.03 1.01 2.72 42.19 0.11 1.12 16 14 H 0.05 1.98 7.77 -2.38 -0.02 1.96 16 15 C -0.09 -2.74 3.65 -10.27 -0.04 -2.78 16 16 C -0.15 -4.86 7.66 31.18 0.24 -4.62 16 17 C -0.13 -3.00 8.09 31.19 0.25 -2.75 16 18 C -0.12 -2.75 7.64 31.12 0.24 -2.51 16 19 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 20 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 21 H -0.03 -2.03 7.56 -2.39 -0.02 -2.05 16 22 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 23 H 0.05 1.93 7.70 -2.39 -0.02 1.91 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.10 2.73 8.12 -2.39 -0.02 2.71 16 26 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 27 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.62 8.14 -2.38 -0.02 1.61 16 32 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -66.77 263.01 0.50 -66.27 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.06 Total: 5.92 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 2.75 Total: -34.35 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.33 Total: -85.54 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.77 0.50 -66.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885274459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.138 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds