Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09006 * 115.55675 * 350.58421 * 10 9 7 12 12 C 1.53001 * 117.49696 * 136.25420 * 10 9 7 13 13 C 1.53002 * 117.49912 * 204.91301 * 10 9 7 14 14 H 1.08998 * 117.50352 * 145.02732 * 13 10 9 15 15 C 1.53000 * 117.49868 * 0.02562 * 13 10 9 16 16 C 1.54259 * 110.03524 * 177.90585 * 15 13 10 17 17 C 1.54961 * 104.16363 * 217.13603 * 16 15 13 18 18 C 1.54893 * 102.77547 * 37.89287 * 17 16 15 19 19 C 1.53876 * 110.03066 * 60.68867 * 15 13 10 20 20 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 22 22 H 1.09004 * 117.50197 * 214.97781 * 12 10 9 23 23 H 1.08998 * 117.49905 * 359.97438 * 12 10 9 24 24 H 1.09007 * 110.01784 * 299.30441 * 15 13 10 25 25 H 1.08998 * 110.48518 * 335.79197 * 16 15 13 26 26 H 1.09001 * 110.48234 * 98.43031 * 16 15 13 27 27 H 1.08997 * 110.72562 * 279.57582 * 17 16 15 28 28 H 1.09000 * 110.92085 * 156.29409 * 17 16 15 29 29 H 1.08998 * 110.48813 * 203.40326 * 18 17 16 30 30 H 1.08997 * 110.48974 * 80.76022 * 18 17 16 31 31 H 1.09002 * 110.03586 * 238.57305 * 19 15 13 32 32 H 1.09007 * 110.03003 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.1335 -3.5788 -0.1603 12 6 1.5624 -4.7587 0.9390 13 6 1.3456 -4.8840 -0.5712 14 1 1.9519 -5.6137 -1.1077 15 6 -0.0774 -4.6922 -1.0996 16 6 -0.6089 -6.0190 -1.6799 17 6 -1.4425 -5.5868 -2.9126 18 6 -0.6098 -4.4186 -3.4966 19 6 -0.0783 -3.6748 -2.2540 20 1 -0.4850 0.8401 0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.3114 -5.4060 1.3952 23 1 0.6914 -4.5396 1.5566 24 1 -0.7300 -4.3474 -0.2975 25 1 0.2179 -6.6606 -1.9844 26 1 -1.2398 -6.5283 -0.9514 27 1 -2.4309 -5.2425 -2.6084 28 1 -1.5234 -6.4012 -3.6326 29 1 -1.2416 -3.7610 -4.0937 30 1 0.2170 -4.8012 -4.0949 31 1 -0.7320 -2.8366 -2.0125 32 1 0.9352 -3.3180 -2.4380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885274477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -2.706427 kcal Electronic energy + Delta-G solvation = -12535.763783 eV Core-core repulsion = 10495.608507 eV Total energy + Delta-G solvation = -2040.155277 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.97288 -37.22973 -35.00122 -31.75503 -29.41982 -29.30479 -25.89429 -22.70262 -22.11424 -21.45598 -19.94504 -19.31422 -16.88217 -16.63313 -16.10160 -15.62797 -15.12671 -14.62157 -14.10546 -13.66362 -13.09323 -12.93167 -12.76401 -12.59846 -12.22982 -12.14491 -11.86229 -11.84406 -11.78873 -11.59706 -11.43080 -11.19509 -10.64827 -10.48341 -8.79823 -7.96643 -5.23114 1.46346 1.49386 1.55527 2.54085 3.11287 3.48287 3.74234 3.84230 3.88507 4.02842 4.29347 4.45002 4.47092 4.66545 4.70492 4.78846 4.83109 4.92552 4.97453 5.04663 5.09400 5.19938 5.29300 5.33052 5.47546 5.51073 5.57270 5.63507 5.65518 6.25116 7.31013 8.07447 8.31181 9.26213 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.010111 C = 0.008821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.025704 B = 2768.534102 C = 3173.394316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.296 1.296 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.699 5.699 10 C 0.111 3.889 11 H 0.104 0.896 12 C -0.215 4.215 13 C -0.162 4.162 14 H 0.117 0.883 15 C -0.053 4.053 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.105 4.105 20 H 0.251 0.749 21 H 0.377 0.623 22 H 0.106 0.894 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -11.670 -4.542 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.222 1.222 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.334 5.334 10 C -0.001 4.001 11 H 0.121 0.879 12 C -0.256 4.256 13 C -0.183 4.183 14 H 0.135 0.865 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.143 4.143 20 H 0.060 0.940 21 H 0.210 0.790 22 H 0.124 0.876 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.531 -11.471 -4.542 12.349 hybrid contribution -0.136 1.290 0.332 1.339 sum 0.395 -10.180 -4.210 11.024 Atomic orbital electron populations 1.69827 1.06640 1.26177 1.59075 1.25579 0.96383 1.01125 1.03461 0.85182 0.77172 0.79004 0.78217 1.22216 1.20358 1.20309 1.19674 0.91657 0.85040 1.41612 0.90314 1.42087 1.05380 1.00117 1.85839 1.21265 0.95028 0.81974 1.01810 0.87867 1.23614 1.03660 1.05806 0.92533 1.22972 0.97563 1.02514 0.95251 0.86522 1.21120 0.93882 0.95834 0.96296 1.22402 0.99551 0.95502 0.97067 1.22499 0.98068 0.97789 0.97322 1.22380 0.99532 0.97347 0.96636 1.21975 1.00078 0.96922 0.95283 0.93999 0.78974 0.87617 0.91410 0.94342 0.90289 0.91342 0.92141 0.89566 0.92267 0.90956 0.95386 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 4 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.25 -13.99 9.98 84.03 0.84 -13.15 16 8 H 0.08 4.22 7.82 -2.91 -0.02 4.20 16 9 N -0.70 -36.25 4.58 -322.94 -1.48 -37.73 16 10 C 0.11 4.58 6.17 44.99 0.28 4.86 16 11 H 0.10 4.08 8.12 -2.38 -0.02 4.06 16 12 C -0.22 -7.57 10.11 30.62 0.31 -7.26 16 13 C -0.16 -5.48 4.99 -10.77 -0.05 -5.54 16 14 H 0.12 3.35 7.81 -2.39 -0.02 3.33 16 15 C -0.05 -1.80 2.41 -10.07 -0.02 -1.83 16 16 C -0.11 -2.78 6.37 31.69 0.20 -2.58 16 17 C -0.12 -2.89 6.91 31.91 0.22 -2.67 16 18 C -0.12 -3.50 6.83 31.67 0.22 -3.28 16 19 C -0.10 -3.96 5.07 31.32 0.16 -3.80 16 20 H 0.25 15.11 8.31 -92.71 -0.77 14.33 16 21 H 0.38 21.03 6.35 -92.71 -0.59 20.44 16 22 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 23 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 24 H 0.04 1.51 7.69 -2.38 -0.02 1.49 16 25 H 0.08 1.80 7.64 -2.39 -0.02 1.78 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.24 8.04 -2.39 -0.02 1.22 16 32 H 0.05 2.02 7.18 -2.38 -0.02 2.00 16 Total: -1.00 -62.47 258.73 3.93 -58.53 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.49 Total: 29.22 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 2.61 Total: -39.02 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -1.20 Total: -97.28 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -62.47 3.93 -58.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885274477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.825 kcal (2) G-P(sol) polarization free energy of solvation -62.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds