Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47405 * 2 1 4 4 C 1.50703 * 109.47119 * 119.99975 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00642 * 4 2 1 6 6 C 1.37872 * 120.00153 * 299.99602 * 4 2 1 7 7 N 1.31517 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00315 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47159 * 90.00356 * 8 6 4 10 10 H 1.48507 * 109.47268 * 210.00561 * 8 6 4 11 11 H 1.48504 * 109.46735 * 330.00259 * 8 6 4 12 12 N 1.46502 * 109.47010 * 239.99986 * 2 1 3 13 13 C 1.40438 * 120.00254 * 84.99947 * 12 2 1 14 14 C 1.35207 * 126.04243 * 0.02562 * 13 12 2 15 15 N 1.37443 * 106.67341 * 180.02562 * 14 13 12 16 16 C 1.46502 * 126.39339 * 180.02562 * 15 14 13 17 17 C 1.34923 * 107.21023 * 359.97438 * 15 14 13 18 18 N 1.30594 * 108.86117 * 0.02562 * 17 15 14 19 19 H 1.08996 * 109.47379 * 60.00148 * 1 2 3 20 20 H 1.09008 * 109.46989 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47456 * 299.99950 * 1 2 3 22 22 H 0.96999 * 119.99875 * 179.97438 * 7 6 4 23 23 H 0.97000 * 120.00104 * 264.99221 * 12 2 1 24 24 H 1.07995 * 126.66131 * 0.02562 * 14 13 12 25 25 H 1.08994 * 109.47343 * 270.00143 * 16 15 14 26 26 H 1.09008 * 109.47111 * 30.00124 * 16 15 14 27 27 H 1.08999 * 109.47039 * 149.99472 * 16 15 14 28 28 H 1.07998 * 125.56976 * 180.26702 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1524 0.0099 -2.4060 14 6 1.8683 1.3169 -2.6042 15 7 2.1417 1.5840 -3.9244 16 6 1.9862 2.8744 -4.6003 17 6 2.5811 0.4363 -4.4812 18 7 2.5854 -0.5000 -3.5709 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.7083 1.1609 3.4843 23 1 2.2491 -1.6318 -1.1526 24 1 1.4985 2.0152 -1.8681 25 1 0.9821 2.9472 -5.0180 26 1 2.1410 3.6811 -3.8836 27 1 2.7201 2.9553 -5.4022 28 1 2.8839 0.3132 -5.5106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953000261.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = 66.842069 kcal Electronic energy + Delta-G solvation = -12033.290864 eV Core-core repulsion = 9892.611093 eV Total energy + Delta-G solvation = -2140.679771 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.23285 -35.60787 -33.47774 -32.02097 -28.81499 -27.76132 -25.84266 -25.06013 -21.25739 -20.52196 -19.22477 -17.07294 -16.20741 -15.18000 -14.85127 -14.38284 -13.83935 -13.41837 -12.91535 -12.74135 -12.43901 -12.07658 -11.71518 -11.05698 -10.95788 -10.67052 -10.18802 -10.12009 -9.38190 -9.35475 -8.91725 -8.57250 -8.34212 -6.24102 -6.05108 -4.12235 2.70551 3.29820 3.32356 3.36170 3.40265 4.06989 4.34460 4.63975 4.93414 5.25934 5.26485 5.30977 5.47602 5.73956 6.40498 6.81182 6.83857 6.98361 7.10790 7.24414 7.60184 7.73786 7.82014 7.99059 8.20970 8.37328 8.82079 8.99653 9.30222 9.56504 11.00200 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.067344 B = 0.008389 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.678128 B = 3337.046462 C = 3515.708922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.286 3.714 3 H 0.031 0.969 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.718 5.718 13 C 0.302 3.698 14 C -0.154 4.154 15 N -0.464 5.464 16 C 0.083 3.917 17 C 0.187 3.813 18 N -0.538 5.538 19 H 0.009 0.991 20 H 0.027 0.973 21 H 0.087 0.913 22 H 0.262 0.738 23 H 0.389 0.611 24 H 0.166 0.834 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 3.946 -10.783 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.182 3.818 3 H 0.049 0.951 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.353 5.353 13 C 0.077 3.923 14 C -0.287 4.287 15 N -0.153 5.153 16 C -0.060 4.060 17 C -0.094 4.094 18 N -0.266 5.266 19 H 0.028 0.972 20 H 0.046 0.954 21 H 0.105 0.895 22 H 0.072 0.928 23 H 0.222 0.778 24 H 0.184 0.816 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.992 3.547 -10.657 11.275 hybrid contribution 0.092 0.157 0.941 0.958 sum 1.084 3.704 -9.716 10.454 Atomic orbital electron populations 1.22187 0.99408 0.99378 1.00064 1.18484 0.90148 0.92814 0.80319 0.95106 1.21275 1.31517 1.13039 0.90298 0.92100 1.24865 0.94925 0.95065 0.98958 1.69889 1.36483 1.22864 1.23661 0.86458 0.78499 0.80016 0.82197 1.20645 1.21171 1.19842 1.44580 1.74040 1.11644 1.05029 1.17844 0.97866 0.89261 0.87333 1.21662 1.22366 0.98489 0.86183 1.44930 1.51114 1.09789 1.09498 1.21830 1.02339 0.83852 0.97989 1.24492 1.04209 0.81260 0.99486 1.69943 1.25439 1.31361 0.99829 0.97153 0.95351 0.89487 0.92786 0.77768 0.81641 0.91393 0.90163 0.90269 0.78660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.28 37.16 0.34 -3.45 15 2 C 0.29 7.40 2.54 -69.08 -0.18 7.23 15 3 H 0.03 0.86 7.13 -51.93 -0.37 0.49 15 4 C -0.52 -14.46 8.73 -34.44 -0.30 -14.76 15 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 15 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 12 N -0.72 -17.13 5.29 -55.21 -0.29 -17.42 15 13 C 0.30 6.73 8.04 -153.34 -1.23 5.50 15 14 C -0.15 -3.07 10.72 -16.11 -0.17 -3.24 15 15 N -0.46 -7.27 3.16 -125.68 -0.40 -7.67 15 16 C 0.08 0.82 11.18 59.85 0.67 1.49 15 17 C 0.19 3.00 12.55 -90.41 -1.13 1.87 15 18 N -0.54 -11.05 11.26 -13.64 -0.15 -11.20 15 19 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 20 H 0.03 0.69 8.14 -51.92 -0.42 0.27 15 21 H 0.09 2.33 6.07 -51.93 -0.32 2.02 15 22 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 23 H 0.39 9.11 8.67 -40.82 -0.35 8.75 15 24 H 0.17 3.32 7.40 -52.49 -0.39 2.93 15 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.08 0.75 8.14 -51.92 -0.42 0.32 15 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 15 28 H 0.20 2.15 8.06 -52.49 -0.42 1.72 15 LS Contribution 244.33 15.07 3.68 3.68 Total: -1.00 -31.29 244.33 -7.16 -38.45 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -3.50 Total: 6.10 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.10 Total: -3.70 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.22 Total: -60.75 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.29 -7.16 -38.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953000261.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.291 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds