Wall clock time and date at job start Mon Mar 30 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47405 * 2 1 4 4 C 1.50703 * 109.47119 * 119.99975 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00642 * 4 2 1 6 6 C 1.37872 * 120.00153 * 299.99602 * 4 2 1 7 7 N 1.31517 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00315 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47159 * 90.00356 * 8 6 4 10 10 H 1.48507 * 109.47268 * 210.00561 * 8 6 4 11 11 H 1.48504 * 109.46735 * 330.00259 * 8 6 4 12 12 N 1.46502 * 109.47010 * 239.99986 * 2 1 3 13 13 C 1.40438 * 120.00254 * 84.99947 * 12 2 1 14 14 C 1.35207 * 126.04243 * 0.02562 * 13 12 2 15 15 N 1.37443 * 106.67341 * 180.02562 * 14 13 12 16 16 C 1.46502 * 126.39339 * 180.02562 * 15 14 13 17 17 C 1.34923 * 107.21023 * 359.97438 * 15 14 13 18 18 N 1.30594 * 108.86117 * 0.02562 * 17 15 14 19 19 H 1.08996 * 109.47379 * 60.00148 * 1 2 3 20 20 H 1.09008 * 109.46989 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47456 * 299.99950 * 1 2 3 22 22 H 0.96999 * 119.99875 * 179.97438 * 7 6 4 23 23 H 0.97000 * 120.00104 * 264.99221 * 12 2 1 24 24 H 1.07995 * 126.66131 * 0.02562 * 14 13 12 25 25 H 1.08994 * 109.47343 * 270.00143 * 16 15 14 26 26 H 1.09008 * 109.47111 * 30.00124 * 16 15 14 27 27 H 1.08999 * 109.47039 * 149.99472 * 16 15 14 28 28 H 1.07998 * 125.56976 * 180.26702 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1524 0.0099 -2.4060 14 6 1.8683 1.3169 -2.6042 15 7 2.1417 1.5840 -3.9244 16 6 1.9862 2.8744 -4.6003 17 6 2.5811 0.4363 -4.4812 18 7 2.5854 -0.5000 -3.5709 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.7083 1.1609 3.4843 23 1 2.2491 -1.6318 -1.1526 24 1 1.4985 2.0152 -1.8681 25 1 0.9821 2.9472 -5.0180 26 1 2.1410 3.6811 -3.8836 27 1 2.7201 2.9553 -5.4022 28 1 2.8839 0.3132 -5.5106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953000261.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:57 Heat of formation + Delta-G solvation = 47.433665 kcal Electronic energy + Delta-G solvation = -12034.132475 eV Core-core repulsion = 9892.611093 eV Total energy + Delta-G solvation = -2141.521383 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.62993 -37.47029 -34.99603 -33.81998 -30.64073 -29.17930 -27.35563 -26.91373 -23.03863 -21.95369 -20.89318 -18.74743 -17.90469 -16.85143 -16.38326 -15.98184 -15.47981 -14.89573 -14.53819 -14.11897 -13.84697 -13.55528 -13.26354 -12.96883 -12.86842 -12.62389 -12.22519 -12.07368 -11.09340 -10.85690 -10.79897 -10.49854 -9.99951 -8.17739 -7.89090 -6.29993 1.35970 1.43956 1.44258 1.55320 2.13351 2.40684 2.52036 2.99279 3.14369 4.08024 4.18023 4.32040 4.56156 4.77717 4.78917 4.89301 5.02316 5.15193 5.34996 5.43521 5.57481 5.75124 5.92884 6.14084 6.46370 6.63477 6.87578 7.26022 7.38413 7.62124 8.90131 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.067344 B = 0.008389 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.678128 B = 3337.046462 C = 3515.708922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.296 3.704 3 H 0.004 0.996 4 C -0.546 4.546 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.270 1.270 12 N -0.728 5.728 13 C 0.267 3.733 14 C -0.164 4.164 15 N -0.459 5.459 16 C 0.074 3.926 17 C 0.209 3.791 18 N -0.577 5.577 19 H 0.020 0.980 20 H 0.024 0.976 21 H 0.068 0.932 22 H 0.266 0.734 23 H 0.387 0.613 24 H 0.155 0.845 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 4.309 -12.125 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.192 3.808 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.194 1.194 12 N -0.363 5.363 13 C 0.043 3.957 14 C -0.298 4.298 15 N -0.146 5.146 16 C -0.067 4.067 17 C -0.073 4.073 18 N -0.305 5.305 19 H 0.039 0.961 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.219 0.781 24 H 0.173 0.827 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.135 0.865 28 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.461 3.955 -12.044 12.761 hybrid contribution -0.042 0.130 1.205 1.213 sum 1.419 4.085 -10.839 11.670 Atomic orbital electron populations 1.21988 0.99044 0.98872 0.99554 1.18160 0.90296 0.91357 0.81012 0.97861 1.21549 1.32100 1.13317 0.91508 0.92537 1.25658 0.94925 0.95702 1.01750 1.69997 1.36977 1.23793 1.24516 0.85429 0.78044 0.78909 0.78451 1.20151 1.20401 1.19421 1.44319 1.75089 1.11479 1.05451 1.18114 0.99883 0.90216 0.87499 1.21591 1.22396 0.97607 0.88238 1.45202 1.49670 1.11787 1.07921 1.22262 1.04717 0.81036 0.98646 1.25517 1.01025 0.80205 1.00591 1.69897 1.27189 1.33503 0.99958 0.96139 0.95678 0.91307 0.92490 0.78080 0.82724 0.89623 0.89898 0.86477 0.73295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.96 9.28 71.98 0.67 -6.29 15 2 C 0.30 15.85 2.54 44.24 0.11 15.96 15 3 H 0.00 0.21 7.13 -2.39 -0.02 0.19 15 4 C -0.55 -30.86 8.73 25.60 0.22 -30.64 15 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 15 6 C 0.02 1.08 5.30 84.65 0.45 1.53 15 7 N -0.91 -52.14 11.32 21.45 0.24 -51.90 15 8 Si 0.97 43.68 29.54 68.60 2.03 45.70 15 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 12 N -0.73 -35.75 5.29 -328.59 -1.74 -37.49 15 13 C 0.27 11.99 8.04 131.07 1.05 13.04 15 14 C -0.16 -6.52 10.72 83.11 0.89 -5.63 15 15 N -0.46 -13.23 3.16 -551.55 -1.74 -14.97 15 16 C 0.07 1.19 11.18 127.77 1.43 2.62 15 17 C 0.21 6.06 12.55 180.27 2.26 8.32 15 18 N -0.58 -23.14 11.26 -197.07 -2.22 -25.36 15 19 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 20 H 0.02 1.24 8.14 -2.38 -0.02 1.22 15 21 H 0.07 3.78 6.07 -2.39 -0.01 3.76 15 22 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 23 H 0.39 18.74 8.67 -92.71 -0.80 17.94 15 24 H 0.16 6.38 7.40 -2.91 -0.02 6.36 15 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 15 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 15 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 15 28 H 0.25 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -68.72 244.33 4.01 -64.72 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.35 Total: 20.39 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 7.09 Total: -1.09 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -5.46 Total: -129.72 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.72 4.01 -64.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953000261.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.149 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds