Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00266 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47410 * 89.99863 * 9 7 5 11 11 H 1.48507 * 109.47123 * 209.99998 * 9 7 5 12 12 H 1.48502 * 109.47140 * 329.99450 * 9 7 5 13 13 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 14 14 C 1.34935 * 126.39513 * 60.02712 * 13 2 1 15 15 N 1.30593 * 108.86364 * 179.97438 * 14 13 2 16 16 C 1.34344 * 109.33971 * 359.97438 * 15 14 13 17 17 N 1.40451 * 126.04067 * 180.02562 * 16 15 14 18 18 C 1.35196 * 107.91686 * 359.77136 * 16 15 14 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 23 23 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 24 24 H 0.96997 * 120.00293 * 180.02562 * 8 7 5 25 25 H 1.08001 * 125.56580 * 359.94065 * 14 13 2 26 26 H 0.96996 * 120.00057 * 0.02562 * 17 16 15 27 27 H 0.96997 * 120.00240 * 180.02562 * 17 16 15 28 28 H 1.07995 * 126.66637 * 180.24445 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9616 -1.9896 -3.9028 10 1 2.0216 -3.1333 -4.0194 11 1 3.8102 -1.9202 -5.1196 12 1 3.8237 -2.1771 -2.7082 13 7 2.0183 -0.6905 1.1962 14 6 1.7736 -1.9732 1.5362 15 7 2.3745 -2.2324 2.6664 16 6 3.0218 -1.1335 3.0883 17 7 3.7821 -1.0226 4.2641 18 6 2.8167 -0.1548 2.1784 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 3.1263 -0.7994 -1.2055 23 1 1.6054 -1.7198 -1.2951 24 1 1.8916 -0.0461 -5.6800 25 1 1.1777 -2.6712 0.9670 26 1 3.8753 -1.7860 4.8552 27 1 4.2141 -0.1827 4.4849 28 1 3.2031 0.8529 2.2170 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067790.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = 35.206729 kcal Electronic energy + Delta-G solvation = -12046.522229 eV Core-core repulsion = 9904.470647 eV Total energy + Delta-G solvation = -2142.051582 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.80087 -37.43884 -34.99822 -34.09459 -31.82211 -29.53071 -28.46404 -25.47890 -23.33777 -21.78149 -20.84339 -19.16094 -17.71827 -16.95606 -16.57031 -16.23858 -15.79518 -15.17595 -14.77016 -14.54882 -14.37738 -13.87197 -13.20548 -13.01594 -12.78888 -12.27549 -11.93545 -11.85201 -11.50448 -11.27059 -10.85861 -10.78295 -10.15262 -8.30981 -8.20109 -6.35092 1.31425 1.34329 1.38144 1.47156 2.03574 2.33414 2.41692 3.04494 3.07389 3.84380 4.12613 4.20048 4.20989 4.40750 4.68533 4.82991 4.95197 5.11046 5.20463 5.30206 5.51280 5.55416 5.66839 6.19504 6.38768 6.71712 6.83484 6.87318 7.29589 7.57308 8.84417 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.052167 B = 0.009393 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.613330 B = 2980.140599 C = 3221.465832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.150 3.850 3 H 0.092 0.908 4 C -0.011 4.011 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.938 3.062 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.439 5.439 14 C 0.197 3.803 15 N -0.561 5.561 16 C 0.256 3.744 17 N -0.853 5.853 18 C -0.148 4.148 19 H 0.065 0.935 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.012 0.988 23 H 0.029 0.971 24 H 0.267 0.733 25 H 0.217 0.783 26 H 0.402 0.598 27 H 0.413 0.587 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -2.218 13.193 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.049 4.049 5 C -0.559 4.559 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.762 3.238 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.122 5.122 14 C -0.086 4.086 15 N -0.289 5.289 16 C 0.030 3.970 17 N -0.404 5.404 18 C -0.283 4.283 19 H 0.084 0.916 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.234 0.766 26 H 0.230 0.770 27 H 0.244 0.756 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.545 -2.852 13.193 13.586 hybrid contribution 0.629 0.333 -0.785 1.060 sum 2.174 -2.520 12.408 12.847 Atomic orbital electron populations 1.21965 0.92315 1.03124 1.02421 1.21373 0.96079 0.96379 0.81343 0.88982 1.19807 0.96201 0.96520 0.92382 1.21160 1.35333 1.09218 0.90170 0.92975 1.25761 0.96495 1.00261 0.95611 1.70012 1.48300 1.41173 0.98783 0.85850 0.79552 0.80446 0.77943 1.18797 1.21199 1.18322 1.45648 1.37076 1.11052 1.18411 1.24911 1.02954 0.86264 0.94440 1.69926 1.17392 1.28198 1.13381 1.17886 0.97649 0.90386 0.91086 1.41180 1.59413 1.17467 1.22384 1.22051 1.10258 1.01762 0.94261 0.91610 0.90958 0.91769 0.96956 0.95306 0.92390 0.76637 0.76966 0.75598 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.05 71.98 0.65 -3.85 15 2 C 0.15 5.39 3.01 44.99 0.14 5.52 15 3 H 0.09 3.31 8.08 -2.39 -0.02 3.29 15 4 C -0.01 -0.48 3.51 29.85 0.10 -0.37 15 5 C -0.52 -27.40 8.96 25.60 0.23 -27.17 15 6 H 0.05 2.95 7.30 -2.92 -0.02 2.93 15 7 C 0.02 0.93 5.47 84.66 0.46 1.40 15 8 N -0.94 -56.20 13.96 21.45 0.30 -55.90 15 9 Si 0.94 42.87 27.47 68.60 1.88 44.75 15 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 12 H -0.26 -11.47 6.54 99.48 0.65 -10.82 15 13 N -0.44 -14.82 2.63 -505.60 -1.33 -16.15 15 14 C 0.20 6.58 11.63 180.27 2.10 8.68 15 15 N -0.56 -19.70 11.26 -197.05 -2.22 -21.92 15 16 C 0.26 8.13 8.31 131.06 1.09 9.22 15 17 N -0.85 -19.72 9.18 -55.78 -0.51 -20.23 15 18 C -0.15 -4.69 11.60 83.11 0.96 -3.72 15 19 H 0.06 1.97 7.95 -2.39 -0.02 1.95 15 20 H 0.07 2.57 6.95 -2.39 -0.02 2.55 15 21 H 0.06 1.80 8.14 -2.38 -0.02 1.78 15 22 H 0.01 0.56 7.20 -2.39 -0.02 0.54 15 23 H 0.03 1.21 7.51 -2.39 -0.02 1.19 15 24 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 25 H 0.22 6.09 8.06 -2.91 -0.02 6.07 15 26 H 0.40 8.34 8.96 -92.71 -0.83 7.51 15 27 H 0.41 7.15 8.96 -92.71 -0.83 6.32 15 28 H 0.18 4.79 8.06 -2.91 -0.02 4.76 15 Total: -1.00 -63.86 242.26 3.31 -60.55 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.54 Total: 19.20 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.73 Total: -10.30 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.76 Total: -114.20 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -63.86 3.31 -60.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067790.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.755 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds