Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 N 1.46506 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.40127 * 126.48953 * 90.03139 * 4 3 2 6 6 N 1.28666 * 108.93182 * 179.97438 * 5 4 3 7 7 C 1.34840 * 109.63957 * 359.97438 * 6 5 4 8 8 C 1.41491 * 126.02576 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00451 * 179.97438 * 8 7 6 10 10 C 1.39738 * 119.99651 * 359.97438 * 8 7 6 11 11 N 1.30988 * 120.00189 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99850 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47445 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47125 * 120.00744 * 12 10 8 15 15 H 1.48500 * 109.47406 * 240.00147 * 12 10 8 16 16 C 1.35013 * 126.49396 * 269.70945 * 4 3 2 17 17 C 1.50700 * 126.77037 * 0.02562 * 16 4 3 18 18 H 1.08996 * 109.47134 * 60.00388 * 1 2 3 19 19 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47534 * 299.99582 * 1 2 3 21 21 H 1.09004 * 109.47298 * 240.00221 * 2 1 3 22 22 H 1.09004 * 109.47552 * 120.00092 * 2 1 3 23 23 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 24 24 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 25 25 H 0.97001 * 120.00265 * 179.97438 * 11 10 8 26 26 H 1.09001 * 109.47273 * 89.99707 * 17 16 4 27 27 H 1.09006 * 109.47103 * 209.99303 * 17 16 4 28 28 H 1.09000 * 109.47370 * 329.99329 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3388 1.4430 -1.1256 6 7 5.5653 1.4434 -0.7369 7 6 5.6137 1.4438 0.6106 8 6 6.7872 1.4448 1.4011 9 1 6.7125 1.4455 2.4785 10 6 8.0428 1.4450 0.7878 11 7 8.1334 1.4447 -0.5189 12 14 9.5920 1.4471 1.8314 13 1 9.2204 1.4477 3.2691 14 1 10.3946 0.2348 1.5286 15 1 10.3930 2.6597 1.5262 16 6 4.3075 1.4482 1.0863 17 6 3.8729 1.4552 2.5293 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.6766 1.9564 -0.8900 25 1 9.0050 1.4452 -0.9447 26 1 3.7685 0.4292 2.8823 27 1 4.6203 1.9722 3.1313 28 1 2.9159 1.9692 2.6181 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958541146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = 70.723596 kcal Electronic energy + Delta-G solvation = -12119.623938 eV Core-core repulsion = 9979.112482 eV Total energy + Delta-G solvation = -2140.511455 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90540 -35.20554 -33.22264 -31.78660 -30.36870 -27.18448 -25.79680 -24.35379 -21.74560 -20.19296 -18.98179 -17.09626 -15.21678 -14.89953 -14.64072 -14.36735 -13.16443 -13.01277 -12.67147 -12.33282 -11.97687 -11.86997 -11.59069 -11.25534 -11.05659 -10.89589 -10.74824 -10.52759 -10.20705 -9.65865 -9.24877 -8.81770 -8.35686 -7.32678 -6.31168 -4.10264 2.87670 3.19009 3.23985 3.28094 3.69872 4.18095 4.36826 5.03388 5.11161 5.35803 5.49120 5.57899 5.69359 5.83457 5.96960 6.03229 6.05963 6.18591 6.36647 6.39910 6.64972 6.97763 7.20541 7.47494 7.58352 8.23942 8.48558 8.89114 9.14649 10.27643 10.65973 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.069354 B = 0.009305 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.628290 B = 3008.502357 C = 3277.487197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.138 3.862 4 N -0.378 5.378 5 N -0.137 5.137 6 N -0.229 5.229 7 C 0.149 3.851 8 C -0.452 4.452 9 H 0.081 0.919 10 C 0.072 3.928 11 N -0.778 5.778 12 Si 0.906 3.094 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.119 4.119 17 C -0.043 4.043 18 H 0.055 0.945 19 H 0.056 0.944 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.270 0.730 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -1.035 4.502 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.014 3.986 4 N -0.174 5.174 5 N -0.113 5.113 6 N -0.101 5.101 7 C 0.019 3.981 8 C -0.488 4.488 9 H 0.099 0.901 10 C -0.146 4.146 11 N -0.405 5.405 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.250 4.250 17 C -0.102 4.102 18 H 0.074 0.926 19 H 0.075 0.925 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.299 -1.024 2.737 9.747 hybrid contribution 0.569 -0.026 1.513 1.617 sum -8.730 -1.050 4.250 9.766 Atomic orbital electron populations 1.21692 0.95177 1.01804 1.01772 1.21912 0.95646 0.96989 1.03251 1.21394 0.77212 0.97175 1.02782 1.49528 1.05490 1.56148 1.06222 1.81471 0.96066 1.25723 1.08005 1.75067 1.07524 1.15240 1.12254 1.19023 0.91149 0.99687 0.88242 1.18559 0.88192 1.48754 0.93272 0.90103 1.25783 1.00291 0.93574 0.94979 1.70035 1.25220 1.36097 1.09133 0.86301 0.81591 0.78137 0.80778 1.18800 1.20299 1.20292 1.21507 0.91568 1.22286 0.89653 1.19784 0.99618 1.00506 0.90339 0.92568 0.92510 0.92663 0.91256 0.91521 0.90387 0.90003 0.91890 0.93127 0.91052 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 15 2 C -0.14 -2.00 6.26 -26.73 -0.17 -2.17 15 3 C 0.14 2.28 6.30 -4.04 -0.03 2.26 15 4 N -0.38 -8.67 3.63 -56.17 -0.20 -8.87 15 5 N -0.14 -3.72 13.74 60.35 0.83 -2.89 15 6 N -0.23 -6.93 10.55 32.05 0.34 -6.59 15 7 C 0.15 4.28 6.72 -85.02 -0.57 3.71 15 8 C -0.45 -12.67 9.11 -37.78 -0.34 -13.01 15 9 H 0.08 2.10 7.31 -52.49 -0.38 1.71 15 10 C 0.07 1.97 5.49 -17.35 -0.10 1.88 15 11 N -0.78 -22.67 11.92 55.54 0.66 -22.01 15 12 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 15 13 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 15 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 16 C -0.12 -2.87 7.11 -80.90 -0.58 -3.45 15 17 C -0.04 -0.81 9.94 36.01 0.36 -0.45 15 18 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 19 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.05 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.08 1.11 7.16 -51.93 -0.37 0.74 15 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.27 7.20 8.30 -40.82 -0.34 6.86 15 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.07 1.32 7.57 -51.93 -0.39 0.93 15 28 H 0.04 0.67 7.19 -51.93 -0.37 0.29 15 LS Contribution 246.10 15.07 3.71 3.71 Total: -1.00 -32.80 246.10 -4.36 -37.16 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.62 Total: -3.06 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.05 Total: -12.41 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 1.63 Total: -40.35 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.80 -4.36 -37.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.881 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds