Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 N 1.46506 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.40127 * 126.48953 * 90.03139 * 4 3 2 6 6 N 1.28666 * 108.93182 * 179.97438 * 5 4 3 7 7 C 1.34840 * 109.63957 * 359.97438 * 6 5 4 8 8 C 1.41491 * 126.02576 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00451 * 179.97438 * 8 7 6 10 10 C 1.39738 * 119.99651 * 359.97438 * 8 7 6 11 11 N 1.30988 * 120.00189 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99850 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47445 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47125 * 120.00744 * 12 10 8 15 15 H 1.48500 * 109.47406 * 240.00147 * 12 10 8 16 16 C 1.35013 * 126.49396 * 269.70945 * 4 3 2 17 17 C 1.50700 * 126.77037 * 0.02562 * 16 4 3 18 18 H 1.08996 * 109.47134 * 60.00388 * 1 2 3 19 19 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47534 * 299.99582 * 1 2 3 21 21 H 1.09004 * 109.47298 * 240.00221 * 2 1 3 22 22 H 1.09004 * 109.47552 * 120.00092 * 2 1 3 23 23 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 24 24 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 25 25 H 0.97001 * 120.00265 * 179.97438 * 11 10 8 26 26 H 1.09001 * 109.47273 * 89.99707 * 17 16 4 27 27 H 1.09006 * 109.47103 * 209.99303 * 17 16 4 28 28 H 1.09000 * 109.47370 * 329.99329 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3388 1.4430 -1.1256 6 7 5.5653 1.4434 -0.7369 7 6 5.6137 1.4438 0.6106 8 6 6.7872 1.4448 1.4011 9 1 6.7125 1.4455 2.4785 10 6 8.0428 1.4450 0.7878 11 7 8.1334 1.4447 -0.5189 12 14 9.5920 1.4471 1.8314 13 1 9.2204 1.4477 3.2691 14 1 10.3946 0.2348 1.5286 15 1 10.3930 2.6597 1.5262 16 6 4.3075 1.4482 1.0863 17 6 3.8729 1.4552 2.5293 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.6766 1.9564 -0.8900 25 1 9.0050 1.4452 -0.9447 26 1 3.7685 0.4292 2.8823 27 1 4.6203 1.9722 3.1313 28 1 2.9159 1.9692 2.6181 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958541146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = 47.906107 kcal Electronic energy + Delta-G solvation = -12120.613378 eV Core-core repulsion = 9979.112482 eV Total energy + Delta-G solvation = -2141.500896 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.84990 -36.66024 -35.15161 -33.43915 -32.11548 -28.95670 -27.21668 -26.31483 -23.05083 -22.09879 -20.74679 -19.03446 -16.89431 -16.74145 -16.08870 -15.96207 -14.84828 -14.49574 -14.26722 -13.72190 -13.49373 -13.18779 -12.95747 -12.87849 -12.60645 -12.52032 -12.30174 -12.05309 -11.72908 -11.56151 -11.17712 -10.78453 -10.23348 -9.34740 -8.29136 -6.18148 0.99639 1.44622 1.44985 1.61197 2.03721 2.33610 2.35234 3.53267 3.79690 3.95165 4.20146 4.33571 4.40445 4.50510 4.54501 4.85050 4.93007 5.01047 5.08539 5.11539 5.19833 5.29946 5.39126 5.54709 5.64252 6.40992 6.47216 6.90124 7.10138 8.28749 8.71139 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.069354 B = 0.009305 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.628290 B = 3008.502357 C = 3277.487197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.122 3.878 4 N -0.361 5.361 5 N -0.180 5.180 6 N -0.285 5.285 7 C 0.097 3.903 8 C -0.481 4.481 9 H 0.095 0.905 10 C 0.017 3.983 11 N -0.832 5.832 12 Si 0.989 3.011 13 H -0.247 1.247 14 H -0.275 1.275 15 H -0.274 1.274 16 C -0.089 4.089 17 C -0.044 4.044 18 H 0.063 0.937 19 H 0.067 0.933 20 H 0.075 0.925 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.114 0.886 24 H 0.093 0.907 25 H 0.272 0.728 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -1.005 6.963 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.001 3.999 4 N -0.156 5.156 5 N -0.155 5.155 6 N -0.154 5.154 7 C -0.036 4.036 8 C -0.518 4.518 9 H 0.113 0.887 10 C -0.196 4.196 11 N -0.460 5.460 12 Si 0.811 3.189 13 H -0.170 1.170 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.225 4.225 17 C -0.103 4.103 18 H 0.082 0.918 19 H 0.086 0.914 20 H 0.094 0.906 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.132 0.868 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.146 -0.996 5.156 12.321 hybrid contribution 0.839 -0.039 0.808 1.165 sum -10.307 -1.035 5.964 11.953 Atomic orbital electron populations 1.21646 0.91585 1.03087 1.03201 1.21840 0.98559 0.94818 1.01814 1.22044 0.73347 0.99387 1.05158 1.50055 1.07821 1.52559 1.05117 1.81337 0.96012 1.28714 1.09452 1.75012 1.09070 1.17645 1.13663 1.19705 0.93502 1.01958 0.88428 1.18983 0.88939 1.49901 0.93983 0.88698 1.26818 1.03961 0.92653 0.96156 1.70207 1.26043 1.38345 1.11434 0.85054 0.76491 0.78011 0.79376 1.17001 1.20018 1.19968 1.22435 0.90606 1.17214 0.92247 1.20005 1.01581 1.02505 0.86166 0.91768 0.91382 0.90615 0.93792 0.91985 0.86764 0.88887 0.91857 0.90955 0.90723 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 71.98 0.71 -1.64 15 2 C -0.13 -3.45 6.26 30.59 0.19 -3.25 15 3 C 0.12 3.66 6.30 86.38 0.54 4.21 15 4 N -0.36 -16.22 3.63 -331.61 -1.20 -17.42 15 5 N -0.18 -10.09 13.74 37.02 0.51 -9.58 15 6 N -0.29 -17.98 10.55 -52.52 -0.55 -18.53 15 7 C 0.10 5.68 6.72 39.67 0.27 5.95 15 8 C -0.48 -27.39 9.11 23.43 0.21 -27.18 15 9 H 0.10 4.87 7.31 -2.91 -0.02 4.85 15 10 C 0.02 0.96 5.49 85.18 0.47 1.43 15 11 N -0.83 -50.63 11.92 21.80 0.26 -50.37 15 12 Si 0.99 41.61 29.56 68.60 2.03 43.64 15 13 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 15 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 16 C -0.09 -4.21 7.11 42.26 0.30 -3.91 15 17 C -0.04 -1.46 9.94 71.24 0.71 -0.76 15 18 H 0.06 1.02 8.14 -2.39 -0.02 1.00 15 19 H 0.07 1.05 8.14 -2.39 -0.02 1.03 15 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.04 1.37 8.14 -2.38 -0.02 1.35 15 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.11 2.67 7.16 -2.38 -0.02 2.65 15 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.27 15.18 8.30 -92.71 -0.77 14.41 15 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.07 2.51 7.57 -2.38 -0.02 2.49 15 28 H 0.08 2.12 7.19 -2.39 -0.02 2.11 15 Total: -1.00 -75.62 246.10 5.59 -70.03 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.14 Total: 7.38 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.41 Total: -25.15 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -0.99 Total: -95.90 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -75.62 5.59 -70.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.939 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds