Wall clock time and date at job start Mon Mar 30 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47085 * 2 1 4 4 C 1.39022 * 126.76995 * 269.99731 * 3 2 1 5 5 C 1.41497 * 126.01950 * 0.02562 * 4 3 2 6 6 H 1.08002 * 119.99845 * 0.02562 * 5 4 3 7 7 C 1.39738 * 119.99646 * 179.97438 * 5 4 3 8 8 N 1.30985 * 119.99962 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99522 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47192 * 60.00254 * 9 7 5 11 11 H 1.48503 * 109.46603 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47312 * 299.99664 * 9 7 5 13 13 N 1.34840 * 107.95650 * 179.97438 * 4 3 2 14 14 N 1.28668 * 109.63665 * 359.71476 * 13 4 3 15 15 N 1.35014 * 126.77639 * 89.99995 * 3 2 1 16 16 C 1.46506 * 126.48979 * 0.02562 * 15 3 2 17 17 C 1.52997 * 109.47289 * 89.99950 * 16 15 3 18 18 H 1.09002 * 109.47121 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.46786 * 299.99763 * 1 2 3 20 20 H 1.09001 * 109.47264 * 60.00341 * 1 2 3 21 21 H 1.08996 * 109.46830 * 239.99450 * 2 1 3 22 22 H 1.09004 * 109.47308 * 120.00186 * 2 1 3 23 23 H 0.97005 * 119.99420 * 180.02562 * 8 7 5 24 24 H 1.09001 * 109.47060 * 210.00219 * 16 15 3 25 25 H 1.09004 * 109.47073 * 329.99708 * 16 15 3 26 26 H 1.09001 * 109.46832 * 299.99854 * 17 16 15 27 27 H 1.08996 * 109.46952 * 59.99873 * 17 16 15 28 28 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3098 2.2054 -1.1136 5 6 2.1698 1.8108 -2.4652 6 1 1.8179 0.8181 -2.7043 7 6 2.4858 2.7059 -3.4907 8 7 2.9111 3.9104 -3.2006 9 14 2.3003 2.1852 -5.2750 10 1 0.8853 1.8213 -5.5400 11 1 2.6965 3.3084 -6.1621 12 1 3.1713 1.0125 -5.5416 13 7 2.7347 3.4089 -0.6788 14 7 2.7348 3.4285 0.6077 15 7 2.3018 2.1829 1.0814 16 6 2.1617 1.7850 2.4844 17 6 3.4730 1.1661 2.9725 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 3.1301 4.5319 -3.9125 24 1 1.9262 2.6611 3.0888 25 1 1.3585 1.0538 2.5763 26 1 3.7083 0.2901 2.3682 27 1 4.2761 1.8973 2.8806 28 1 3.3686 0.8697 4.0162 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545397.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:20 Heat of formation + Delta-G solvation = 71.660063 kcal Electronic energy + Delta-G solvation = -12339.618957 eV Core-core repulsion = 10199.148110 eV Total energy + Delta-G solvation = -2140.470847 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93118 -34.47494 -33.40591 -32.53374 -29.17716 -28.55055 -25.11026 -23.37174 -22.58411 -20.19885 -18.80660 -17.04748 -15.18939 -14.90553 -14.35202 -14.02268 -13.55052 -13.07402 -12.79586 -12.28264 -11.80482 -11.62031 -11.33580 -11.17657 -11.05994 -10.95455 -10.58667 -10.34816 -10.16298 -9.64689 -9.22955 -8.78238 -8.36215 -7.33086 -6.30405 -4.09732 2.89546 3.21573 3.23546 3.25363 3.71338 4.18380 4.37617 5.15606 5.43287 5.53819 5.57733 5.66182 5.69626 5.86387 5.99842 6.07522 6.27136 6.35960 6.41964 6.59208 6.82971 7.01094 7.21572 7.49080 7.59592 8.24664 8.48463 8.90055 9.15186 10.28837 10.66634 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.046012 B = 0.011974 C = 0.010148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.393199 B = 2337.796603 C = 2758.599968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.112 4.112 4 C 0.152 3.848 5 C -0.452 4.452 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.779 5.779 9 Si 0.906 3.094 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.269 1.269 13 N -0.230 5.230 14 N -0.138 5.138 15 N -0.376 5.376 16 C 0.133 3.867 17 C -0.165 4.165 18 H 0.046 0.954 19 H 0.041 0.959 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.271 0.729 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 -7.189 6.109 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 C -0.243 4.243 4 C 0.022 3.978 5 C -0.488 4.488 6 H 0.098 0.902 7 C -0.146 4.146 8 N -0.405 5.405 9 Si 0.731 3.269 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.102 5.102 14 N -0.113 5.113 15 N -0.173 5.173 16 C 0.009 3.991 17 C -0.224 4.224 18 H 0.065 0.935 19 H 0.060 0.940 20 H 0.081 0.919 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.906 -5.519 6.438 8.692 hybrid contribution -0.419 -1.222 -0.951 1.604 sum -2.325 -6.741 5.487 8.997 Atomic orbital electron populations 1.21747 0.96233 1.00084 1.01992 1.19541 0.94639 0.90465 1.01229 1.21441 1.18745 0.96632 0.87512 1.18984 0.97959 0.87528 0.93349 1.18478 1.42830 0.99875 0.87635 0.90223 1.25773 0.93706 0.94510 1.00594 1.70017 1.32082 1.04651 1.33769 0.86432 0.79303 0.78733 0.82408 1.19374 1.20667 1.19371 1.75073 1.15834 1.19703 0.99592 1.81472 1.22665 0.99957 1.07233 1.49535 1.50756 1.12122 1.04848 1.21302 0.97937 0.99905 0.79916 1.22152 0.98034 1.01589 1.00602 0.93525 0.93951 0.91889 0.90521 0.93365 0.91799 0.89997 0.90398 0.92241 0.91945 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.98 15 2 C -0.02 -0.35 5.80 -27.88 -0.16 -0.51 15 3 C -0.11 -2.66 6.37 -80.90 -0.52 -3.17 15 4 C 0.15 4.31 6.72 -85.01 -0.57 3.74 15 5 C -0.45 -12.57 9.11 -37.78 -0.34 -12.92 15 6 H 0.08 2.04 7.30 -52.49 -0.38 1.66 15 7 C 0.07 1.98 5.49 -17.35 -0.10 1.89 15 8 N -0.78 -22.62 11.92 55.54 0.66 -21.96 15 9 Si 0.91 19.93 29.56 -169.99 -5.02 14.91 15 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 13 N -0.23 -6.92 10.55 32.05 0.34 -6.58 15 14 N -0.14 -3.72 13.74 60.35 0.83 -2.89 15 15 N -0.38 -8.55 3.63 -56.17 -0.20 -8.75 15 16 C 0.13 2.18 6.87 -4.04 -0.03 2.15 15 17 C -0.17 -2.33 10.24 37.16 0.38 -1.95 15 18 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.08 1.44 7.56 -51.93 -0.39 1.05 15 22 H 0.05 0.77 7.84 -51.93 -0.41 0.37 15 23 H 0.27 7.25 8.30 -40.82 -0.34 6.91 15 24 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 25 H 0.08 1.10 7.78 -51.93 -0.40 0.69 15 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 LS Contribution 246.99 15.07 3.72 3.72 Total: -1.00 -32.49 246.99 -4.32 -36.82 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.68 Total: -2.50 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.97 Total: -12.76 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 1.63 Total: -40.18 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.49 -4.32 -36.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545397.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.475 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds