Wall clock time and date at job start Mon Mar 30 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47085 * 2 1 4 4 C 1.39022 * 126.76995 * 269.99731 * 3 2 1 5 5 C 1.41497 * 126.01950 * 0.02562 * 4 3 2 6 6 H 1.08002 * 119.99845 * 0.02562 * 5 4 3 7 7 C 1.39738 * 119.99646 * 179.97438 * 5 4 3 8 8 N 1.30985 * 119.99962 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99522 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47192 * 60.00254 * 9 7 5 11 11 H 1.48503 * 109.46603 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47312 * 299.99664 * 9 7 5 13 13 N 1.34840 * 107.95650 * 179.97438 * 4 3 2 14 14 N 1.28668 * 109.63665 * 359.71476 * 13 4 3 15 15 N 1.35014 * 126.77639 * 89.99995 * 3 2 1 16 16 C 1.46506 * 126.48979 * 0.02562 * 15 3 2 17 17 C 1.52997 * 109.47289 * 89.99950 * 16 15 3 18 18 H 1.09002 * 109.47121 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.46786 * 299.99763 * 1 2 3 20 20 H 1.09001 * 109.47264 * 60.00341 * 1 2 3 21 21 H 1.08996 * 109.46830 * 239.99450 * 2 1 3 22 22 H 1.09004 * 109.47308 * 120.00186 * 2 1 3 23 23 H 0.97005 * 119.99420 * 180.02562 * 8 7 5 24 24 H 1.09001 * 109.47060 * 210.00219 * 16 15 3 25 25 H 1.09004 * 109.47073 * 329.99708 * 16 15 3 26 26 H 1.09001 * 109.46832 * 299.99854 * 17 16 15 27 27 H 1.08996 * 109.46952 * 59.99873 * 17 16 15 28 28 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3098 2.2054 -1.1136 5 6 2.1698 1.8108 -2.4652 6 1 1.8179 0.8181 -2.7043 7 6 2.4858 2.7059 -3.4907 8 7 2.9111 3.9104 -3.2006 9 14 2.3003 2.1852 -5.2750 10 1 0.8853 1.8213 -5.5400 11 1 2.6965 3.3084 -6.1621 12 1 3.1713 1.0125 -5.5416 13 7 2.7347 3.4089 -0.6788 14 7 2.7348 3.4285 0.6077 15 7 2.3018 2.1829 1.0814 16 6 2.1617 1.7850 2.4844 17 6 3.4730 1.1661 2.9725 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 3.1301 4.5319 -3.9125 24 1 1.9262 2.6611 3.0888 25 1 1.3585 1.0538 2.5763 26 1 3.7083 0.2901 2.3682 27 1 4.2761 1.8973 2.8806 28 1 3.3686 0.8697 4.0162 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545397.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:20 Heat of formation + Delta-G solvation = 49.012236 kcal Electronic energy + Delta-G solvation = -12340.601040 eV Core-core repulsion = 10199.148110 eV Total energy + Delta-G solvation = -2141.452931 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.85883 -36.14688 -35.24004 -34.16141 -30.83209 -30.38742 -26.99913 -24.98637 -24.06290 -22.14150 -20.52850 -18.97340 -16.88974 -16.76759 -16.06242 -15.51346 -15.12510 -14.62487 -14.42641 -13.69888 -13.27038 -13.11742 -13.01163 -12.77694 -12.77034 -12.36598 -12.21774 -11.99626 -11.77029 -11.52998 -11.14444 -10.71558 -10.23801 -9.33784 -8.27832 -6.16660 1.03206 1.44434 1.47680 1.57432 2.06463 2.35380 2.35640 3.54712 3.87692 4.10514 4.17520 4.25909 4.39258 4.62397 4.72060 4.75430 4.86293 4.91522 5.12199 5.18788 5.23378 5.33861 5.47617 5.56153 5.69244 6.41683 6.49702 6.92257 7.11518 8.31531 8.72005 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.046012 B = 0.011974 C = 0.010148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.393199 B = 2337.796603 C = 2758.599968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 C -0.078 4.078 4 C 0.101 3.899 5 C -0.481 4.481 6 H 0.093 0.907 7 C 0.018 3.982 8 N -0.832 5.832 9 Si 0.987 3.013 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.257 1.257 13 N -0.287 5.287 14 N -0.182 5.182 15 N -0.360 5.360 16 C 0.115 3.885 17 C -0.157 4.157 18 H 0.087 0.913 19 H 0.049 0.951 20 H 0.035 0.965 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.271 0.729 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -10.017 7.148 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C -0.214 4.214 4 C -0.032 4.032 5 C -0.518 4.518 6 H 0.111 0.889 7 C -0.195 4.195 8 N -0.461 5.461 9 Si 0.808 3.192 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.182 1.182 13 N -0.156 5.156 14 N -0.157 5.157 15 N -0.154 5.154 16 C -0.006 4.006 17 C -0.215 4.215 18 H 0.105 0.895 19 H 0.068 0.932 20 H 0.055 0.945 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.935 -8.327 7.557 11.622 hybrid contribution -0.149 -0.493 -1.003 1.128 sum -3.084 -8.820 6.554 11.413 Atomic orbital electron populations 1.21674 0.94097 1.02482 1.01077 1.19809 0.96274 0.86978 1.03076 1.22342 1.14296 0.98139 0.86654 1.19637 1.00044 0.88314 0.95215 1.18893 1.43905 1.00756 0.88269 0.88919 1.26791 0.92895 0.94195 1.05637 1.70197 1.34392 1.06266 1.35195 0.85202 0.79770 0.78388 0.75853 1.18203 1.20551 1.18168 1.75016 1.18174 1.21477 1.00904 1.81336 1.25642 1.02136 1.06558 1.50081 1.47369 1.10743 1.07237 1.21969 1.00574 1.01659 0.76439 1.22101 0.95654 1.00446 1.03280 0.89461 0.93225 0.94528 0.90570 0.89601 0.91900 0.88744 0.86858 0.92528 0.94203 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.89 71.98 0.71 -3.24 15 2 C -0.02 -0.73 5.80 29.85 0.17 -0.56 15 3 C -0.08 -3.65 6.37 42.26 0.27 -3.38 15 4 C 0.10 5.88 6.72 39.67 0.27 6.14 15 5 C -0.48 -27.36 9.11 23.44 0.21 -27.15 15 6 H 0.09 4.77 7.30 -2.91 -0.02 4.74 15 7 C 0.02 1.00 5.49 85.18 0.47 1.47 15 8 N -0.83 -50.70 11.92 21.80 0.26 -50.44 15 9 Si 0.99 41.68 29.56 68.60 2.03 43.70 15 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 11 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 13 N -0.29 -18.03 10.55 -52.51 -0.55 -18.59 15 14 N -0.18 -10.14 13.74 37.02 0.51 -9.63 15 15 N -0.36 -15.97 3.63 -331.62 -1.20 -17.17 15 16 C 0.11 3.36 6.87 86.38 0.59 3.96 15 17 C -0.16 -3.87 10.24 71.98 0.74 -3.13 15 18 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.08 2.64 7.56 -2.39 -0.02 2.62 15 22 H 0.09 2.30 7.84 -2.38 -0.02 2.28 15 23 H 0.27 15.27 8.30 -92.70 -0.77 14.50 15 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.11 2.59 7.78 -2.38 -0.02 2.58 15 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 15 Total: -1.00 -75.59 246.99 5.61 -69.98 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.14 Total: 8.03 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.43 Total: -25.89 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -0.99 Total: -95.83 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -75.59 5.61 -69.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545397.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.996 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds