Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.39017 * 126.77257 * 270.00040 * 4 3 2 6 6 C 1.41488 * 126.02188 * 359.97438 * 5 4 3 7 7 H 1.08003 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.39730 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.30984 * 120.00047 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47211 * 60.00308 * 10 8 6 12 12 H 1.48503 * 109.47080 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47597 * 300.00088 * 10 8 6 14 14 N 1.34842 * 107.95604 * 179.97438 * 5 4 3 15 15 N 1.28666 * 109.63604 * 359.97438 * 14 5 4 16 16 N 1.35025 * 126.76936 * 89.68570 * 4 3 2 17 17 C 1.46504 * 126.49209 * 359.97438 * 16 4 3 18 18 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 22 22 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 23 23 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 24 24 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 25 25 H 0.97002 * 119.99831 * 179.97438 * 9 8 6 26 26 H 1.08996 * 109.46749 * 89.99841 * 17 16 4 27 27 H 1.08993 * 109.46755 * 209.99584 * 17 16 4 28 28 H 1.09000 * 109.46910 * 330.00066 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3788 1.4425 1.1145 6 6 3.9597 1.4432 2.4659 7 1 2.9064 1.4433 2.7046 8 6 4.9085 1.4427 3.4917 9 7 6.1860 1.4421 3.2022 10 14 4.3552 1.4444 5.2758 11 1 3.5386 0.2330 5.5420 12 1 5.5458 1.4441 6.1633 13 1 3.5413 2.6579 5.5407 14 7 5.6553 1.4418 0.6802 15 7 5.6742 1.4407 -0.6064 16 7 4.3557 1.4362 -1.0806 17 6 3.9344 1.4278 -2.4837 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8932 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 6.8446 1.4421 3.9143 26 1 3.8296 2.4534 -2.8377 27 1 4.6824 0.9108 -3.0846 28 1 2.9777 0.9132 -2.5727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545638.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = 70.391184 kcal Electronic energy + Delta-G solvation = -12252.761274 eV Core-core repulsion = 10112.235404 eV Total energy + Delta-G solvation = -2140.525870 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90554 -34.64834 -33.64115 -32.29133 -29.72970 -27.11266 -25.83617 -24.37240 -21.25038 -20.31104 -18.95166 -17.05717 -15.06151 -14.94098 -14.55479 -14.32440 -13.46606 -13.05311 -12.72598 -12.27869 -12.13139 -11.72112 -11.30892 -11.07692 -11.02006 -10.80097 -10.55370 -10.26954 -10.12923 -9.67180 -9.23140 -8.80966 -8.35564 -7.34538 -6.31371 -4.10840 2.87811 3.20981 3.23170 3.24966 3.76549 4.17799 4.36010 5.37541 5.42285 5.45224 5.57960 5.62577 5.71459 5.84980 5.94925 6.13186 6.21951 6.32236 6.45617 6.64156 6.83791 7.00214 7.19032 7.47025 7.58209 8.21955 8.47490 8.88623 9.14085 10.26733 10.65643 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.031753 B = 0.013855 C = 0.009974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.599451 B = 2020.499554 C = 2806.567612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.013 4.013 4 C -0.114 4.114 5 C 0.153 3.847 6 C -0.451 4.451 7 H 0.080 0.920 8 C 0.072 3.928 9 N -0.778 5.778 10 Si 0.906 3.094 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.269 1.269 14 N -0.230 5.230 15 N -0.138 5.138 16 N -0.382 5.382 17 C 0.109 3.891 18 H 0.054 0.946 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.272 0.728 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 -1.096 -4.909 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.052 4.052 4 C -0.246 4.246 5 C 0.023 3.977 6 C -0.487 4.487 7 H 0.098 0.902 8 C -0.146 4.146 9 N -0.405 5.405 10 Si 0.731 3.269 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.194 1.194 14 N -0.102 5.102 15 N -0.114 5.114 16 N -0.178 5.178 17 C -0.035 4.035 18 H 0.073 0.927 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.151 -1.093 -5.251 8.939 hybrid contribution -1.293 0.004 0.901 1.575 sum -8.443 -1.089 -4.350 9.560 Atomic orbital electron populations 1.21781 0.96591 1.00913 1.01352 1.21531 0.94347 0.97638 1.02198 1.19605 0.88336 0.95986 1.01312 1.21459 0.93233 1.22379 0.87482 1.18990 0.85909 0.99472 0.93376 1.18471 0.93781 1.48845 0.87582 0.90184 1.25777 0.94616 0.93595 1.00631 1.70014 1.00770 1.35887 1.33804 0.86430 0.78671 0.79401 0.82369 1.19349 1.20649 1.19358 1.75071 1.20201 1.15360 0.99557 1.81480 0.96758 1.25868 1.07289 1.49403 1.06986 1.56263 1.05166 1.21496 1.00338 1.01770 0.79915 0.92679 0.93392 0.93323 0.93187 0.91131 0.90463 0.93352 0.91768 0.92209 0.90550 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.15 0.37 -1.55 15 2 C -0.12 -1.95 5.92 -26.74 -0.16 -2.11 15 3 C -0.01 -0.23 5.07 -27.88 -0.14 -0.37 15 4 C -0.11 -2.71 6.37 -80.90 -0.52 -3.23 15 5 C 0.15 4.33 6.72 -85.02 -0.57 3.76 15 6 C -0.45 -12.48 9.11 -37.79 -0.34 -12.83 15 7 H 0.08 2.04 7.30 -52.48 -0.38 1.66 15 8 C 0.07 1.97 5.49 -17.36 -0.10 1.87 15 9 N -0.78 -22.56 11.92 55.54 0.66 -21.90 15 10 Si 0.91 19.88 29.56 -169.99 -5.02 14.85 15 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 14 N -0.23 -6.92 10.55 32.05 0.34 -6.58 15 15 N -0.14 -3.75 13.74 60.35 0.83 -2.92 15 16 N -0.38 -8.75 4.03 -62.90 -0.25 -9.01 15 17 C 0.11 1.74 11.19 59.85 0.67 2.41 15 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.08 1.45 7.56 -51.93 -0.39 1.06 15 24 H 0.05 0.78 7.86 -51.93 -0.41 0.37 15 25 H 0.27 7.24 8.30 -40.82 -0.34 6.90 15 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 28 H 0.07 0.98 7.79 -51.93 -0.40 0.57 15 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -32.60 246.70 -4.20 -36.80 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -3.68 Total: -2.91 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.79 Total: -12.05 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 1.58 Total: -40.41 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.60 -4.20 -36.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545638.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.196 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds