Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.39017 * 126.77257 * 270.00040 * 4 3 2 6 6 C 1.41488 * 126.02188 * 359.97438 * 5 4 3 7 7 H 1.08003 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.39730 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.30984 * 120.00047 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47211 * 60.00308 * 10 8 6 12 12 H 1.48503 * 109.47080 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47597 * 300.00088 * 10 8 6 14 14 N 1.34842 * 107.95604 * 179.97438 * 5 4 3 15 15 N 1.28666 * 109.63604 * 359.97438 * 14 5 4 16 16 N 1.35025 * 126.76936 * 89.68570 * 4 3 2 17 17 C 1.46504 * 126.49209 * 359.97438 * 16 4 3 18 18 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 22 22 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 23 23 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 24 24 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 25 25 H 0.97002 * 119.99831 * 179.97438 * 9 8 6 26 26 H 1.08996 * 109.46749 * 89.99841 * 17 16 4 27 27 H 1.08993 * 109.46755 * 209.99584 * 17 16 4 28 28 H 1.09000 * 109.46910 * 330.00066 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3788 1.4425 1.1145 6 6 3.9597 1.4432 2.4659 7 1 2.9064 1.4433 2.7046 8 6 4.9085 1.4427 3.4917 9 7 6.1860 1.4421 3.2022 10 14 4.3552 1.4444 5.2758 11 1 3.5386 0.2330 5.5420 12 1 5.5458 1.4441 6.1633 13 1 3.5413 2.6579 5.5407 14 7 5.6553 1.4418 0.6802 15 7 5.6742 1.4407 -0.6064 16 7 4.3557 1.4362 -1.0806 17 6 3.9344 1.4278 -2.4837 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8932 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 6.8446 1.4421 3.9143 26 1 3.8296 2.4534 -2.8377 27 1 4.6824 0.9108 -3.0846 28 1 2.9777 0.9132 -2.5727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545638.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = 47.635126 kcal Electronic energy + Delta-G solvation = -12253.748051 eV Core-core repulsion = 10112.235404 eV Total energy + Delta-G solvation = -2141.512647 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.84557 -36.13077 -35.54282 -34.05605 -31.48659 -28.78831 -27.35439 -26.27823 -22.59395 -22.30107 -20.69875 -19.01222 -16.86162 -16.68543 -16.26338 -15.77139 -15.06576 -14.66991 -14.05288 -13.76849 -13.70678 -13.10131 -12.90404 -12.79634 -12.66667 -12.34788 -12.01332 -11.98813 -11.57350 -11.50082 -11.14396 -10.75335 -10.22178 -9.35128 -8.28570 -6.17516 1.00475 1.44387 1.47330 1.57378 2.10376 2.33830 2.35389 3.53414 4.05780 4.07823 4.17799 4.34175 4.48125 4.64413 4.64836 4.73862 4.92456 5.04317 5.12875 5.23822 5.29198 5.35781 5.54939 5.57277 5.67967 6.40825 6.46686 6.90640 7.10661 8.28969 8.71241 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.031753 B = 0.013855 C = 0.009974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.599451 B = 2020.499554 C = 2806.567612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.013 4.013 4 C -0.081 4.081 5 C 0.102 3.898 6 C -0.479 4.479 7 H 0.093 0.907 8 C 0.018 3.982 9 N -0.831 5.831 10 Si 0.986 3.014 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.257 1.257 14 N -0.286 5.286 15 N -0.182 5.182 16 N -0.367 5.367 17 C 0.091 3.909 18 H 0.056 0.944 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.272 0.728 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 -1.139 -5.771 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.053 4.053 4 C -0.216 4.216 5 C -0.031 4.031 6 C -0.516 4.516 7 H 0.111 0.889 8 C -0.196 4.196 9 N -0.460 5.460 10 Si 0.807 3.193 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.181 1.181 14 N -0.155 5.155 15 N -0.157 5.157 16 N -0.162 5.162 17 C -0.050 4.050 18 H 0.075 0.925 19 H 0.088 0.912 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.140 -1.135 -6.192 11.935 hybrid contribution -0.505 0.018 0.905 1.037 sum -10.646 -1.117 -5.287 11.939 Atomic orbital electron populations 1.21713 0.93259 1.02277 1.02572 1.21439 0.97139 0.95461 1.01087 1.19859 0.84332 0.98048 1.03064 1.22352 0.95572 1.17082 0.86640 1.19646 0.86503 1.01711 0.95258 1.18870 0.94579 1.49936 0.88187 0.88936 1.26796 0.94379 0.92713 1.05664 1.70191 1.02282 1.38267 1.35240 0.85207 0.78220 0.79995 0.75837 1.18195 1.20493 1.18147 1.75012 1.21891 1.17764 1.00861 1.81344 0.98759 1.29014 1.06630 1.49938 1.05899 1.52670 1.07676 1.22100 1.02416 1.04324 0.76123 0.92482 0.91175 0.91977 0.92631 0.94085 0.90639 0.89594 0.91848 0.89515 0.89050 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.91 71.98 0.71 -2.30 15 2 C -0.11 -3.36 5.92 30.59 0.18 -3.18 15 3 C -0.01 -0.45 5.07 29.85 0.15 -0.30 15 4 C -0.08 -3.75 6.37 42.26 0.27 -3.48 15 5 C 0.10 5.92 6.72 39.67 0.27 6.19 15 6 C -0.48 -27.14 9.11 23.43 0.21 -26.93 15 7 H 0.09 4.75 7.30 -2.91 -0.02 4.73 15 8 C 0.02 0.98 5.49 85.18 0.47 1.45 15 9 N -0.83 -50.51 11.92 21.79 0.26 -50.25 15 10 Si 0.99 41.55 29.56 68.60 2.03 43.57 15 11 H -0.26 -10.26 7.11 99.48 0.71 -9.56 15 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 15 13 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 14 N -0.29 -17.97 10.55 -52.52 -0.55 -18.53 15 15 N -0.18 -10.16 13.74 37.02 0.51 -9.65 15 16 N -0.37 -16.36 4.03 -352.92 -1.42 -17.78 15 17 C 0.09 2.58 11.19 127.77 1.43 4.01 15 18 H 0.06 1.21 8.14 -2.39 -0.02 1.19 15 19 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.08 2.64 7.56 -2.39 -0.02 2.62 15 24 H 0.09 2.31 7.86 -2.39 -0.02 2.29 15 25 H 0.27 15.24 8.30 -92.71 -0.77 14.47 15 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 28 H 0.11 2.34 7.79 -2.39 -0.02 2.32 15 Total: -1.00 -75.33 246.70 5.65 -69.68 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.14 Total: 7.49 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.69 Total: -24.54 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -1.21 Total: -96.20 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -75.33 5.65 -69.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545638.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.316 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds