Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00017 * 2 1 4 4 C 1.53008 * 109.46901 * 125.00084 * 3 2 1 5 5 N 1.46903 * 109.46710 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99590 * 190.00288 * 5 4 3 7 7 C 1.50697 * 109.47062 * 161.83379 * 6 5 4 8 8 H 1.08003 * 120.00185 * 354.36999 * 7 6 5 9 9 C 1.37875 * 119.99982 * 174.36084 * 7 6 5 10 10 N 1.31510 * 120.00078 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47311 * 60.00424 * 11 9 7 13 13 H 1.48504 * 109.47307 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47186 * 300.00466 * 11 9 7 15 15 C 1.46897 * 111.00263 * 66.04954 * 5 4 3 16 16 C 1.52997 * 117.50034 * 261.91095 * 15 5 4 17 17 C 1.52999 * 117.50125 * 193.24834 * 15 5 4 18 18 H 1.07999 * 119.99814 * 180.02562 * 1 2 3 19 19 H 1.07999 * 120.00137 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.00539 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47126 * 5.00859 * 3 2 1 22 22 H 1.08994 * 109.47394 * 245.00248 * 3 2 1 23 23 H 1.08994 * 109.47230 * 300.00264 * 4 3 2 24 24 H 1.09001 * 109.47071 * 60.00664 * 4 3 2 25 25 H 1.09002 * 109.46847 * 281.83424 * 6 5 4 26 26 H 1.08995 * 109.47379 * 41.83637 * 6 5 4 27 27 H 0.97000 * 119.99959 * 180.02562 * 10 9 7 28 28 H 1.09005 * 115.54791 * 47.57726 * 15 5 4 29 29 H 1.09000 * 117.49441 * 359.97438 * 16 15 5 30 30 H 1.08995 * 117.50263 * 145.01542 * 16 15 5 31 31 H 1.08994 * 117.49727 * 214.97908 * 17 15 5 32 32 H 1.08998 * 117.49758 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 7 3.7691 2.6055 1.1820 6 6 4.8723 2.5766 2.1517 7 6 5.8542 3.6730 1.8283 8 1 5.7255 4.2672 0.9357 9 6 6.9169 3.9177 2.6720 10 7 7.0738 3.1939 3.7588 11 14 8.1337 5.2772 2.2715 12 1 7.4196 6.5777 2.2077 13 1 9.1760 5.3357 3.3277 14 1 8.7732 4.9988 0.9605 15 6 2.8663 3.7341 1.4452 16 6 2.3563 4.5267 0.2400 17 6 3.3992 5.1428 1.1760 18 1 -0.5400 -0.9353 0.0004 19 1 -0.5400 0.9353 0.0004 20 1 1.8500 -0.9352 -0.0004 21 1 1.3585 2.1317 0.0897 22 1 2.6212 1.4027 -0.9313 23 1 2.4773 1.2355 2.1130 24 1 3.7400 0.5066 1.0920 25 1 4.4770 2.7275 3.1563 26 1 5.3758 1.6113 2.1006 27 1 7.8212 3.3663 4.3526 28 1 2.1863 3.6056 2.2874 29 1 2.6911 4.2110 -0.7481 30 1 1.3410 4.9200 0.2894 31 1 3.0695 5.9411 1.8407 32 1 4.4199 5.2322 0.8040 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070592542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = 27.386921 kcal Electronic energy + Delta-G solvation = -12306.016105 eV Core-core repulsion = 10267.165774 eV Total energy + Delta-G solvation = -2038.850331 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48214 -36.24558 -35.22315 -33.95384 -30.45484 -27.91738 -24.21286 -23.72392 -23.03579 -21.00019 -20.54544 -18.56657 -16.70447 -16.58679 -16.45206 -15.80061 -15.32374 -14.50527 -14.21907 -13.95874 -13.60632 -13.38761 -12.94477 -12.65887 -12.57318 -12.31552 -11.98850 -11.94732 -11.59750 -11.21547 -10.98977 -10.67667 -10.51751 -10.16218 -9.04085 -8.15504 -6.23548 1.41985 1.45052 1.45520 1.52527 2.42402 3.05653 3.16360 3.27336 4.01126 4.19754 4.24005 4.30438 4.41116 4.46572 4.63620 4.71744 4.84394 4.91146 5.01478 5.09807 5.17560 5.21394 5.28211 5.38459 5.49560 5.78522 5.79666 5.95584 6.11282 6.42025 6.66148 6.91513 7.44298 8.95437 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050047 B = 0.008932 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.335690 B = 3134.128859 C = 3501.417874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C -0.076 4.076 4 C 0.064 3.936 5 N -0.517 5.517 6 C 0.209 3.791 7 C -0.507 4.507 8 H 0.072 0.928 9 C -0.002 4.002 10 N -0.940 5.940 11 Si 0.964 3.036 12 H -0.265 1.265 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.001 3.999 16 C -0.143 4.143 17 C -0.173 4.173 18 H 0.112 0.888 19 H 0.099 0.901 20 H 0.111 0.889 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.016 0.984 24 H 0.059 0.941 25 H -0.038 1.038 26 H -0.002 1.002 27 H 0.262 0.738 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 -0.875 -6.992 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.181 4.181 3 C -0.113 4.113 4 C -0.064 4.064 5 N -0.241 5.241 6 C 0.083 3.917 7 C -0.546 4.546 8 H 0.090 0.910 9 C -0.199 4.199 10 N -0.581 5.581 11 Si 0.789 3.211 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.108 4.108 16 C -0.180 4.180 17 C -0.210 4.210 18 H 0.130 0.870 19 H 0.118 0.882 20 H 0.129 0.871 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.034 0.966 24 H 0.077 0.923 25 H -0.020 1.020 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.642 -0.837 -7.305 12.936 hybrid contribution 0.674 0.180 1.265 1.444 sum -9.969 -0.657 -6.041 11.675 Atomic orbital electron populations 1.23992 0.95450 1.02636 1.00573 1.22999 0.96554 0.98145 1.00410 1.20625 0.97199 0.95863 0.97653 1.22031 0.95621 0.91670 0.97116 1.61878 1.09528 1.01866 1.50852 1.19373 0.88570 0.95848 0.87916 1.21533 1.08531 1.16625 1.07861 0.90965 1.25900 0.99977 0.99154 0.94861 1.70093 1.31780 1.42059 1.14211 0.85508 0.78259 0.79498 0.77824 1.18994 1.21204 1.19381 1.22157 0.98961 0.90751 0.98926 1.23075 0.98706 1.01718 0.94533 1.23114 0.99856 0.94669 1.03349 0.86975 0.88239 0.87068 0.90963 0.90976 0.96607 0.92281 1.01991 0.98441 0.92938 0.91612 0.88728 0.86825 0.88934 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.91 14.32 67.79 0.97 -2.94 16 2 C -0.16 -3.97 9.52 25.65 0.24 -3.73 16 3 C -0.08 -2.22 5.48 29.85 0.16 -2.06 16 4 C 0.06 2.38 4.93 86.31 0.43 2.81 16 5 N -0.52 -22.90 4.58 -875.51 -4.01 -26.92 16 6 C 0.21 11.43 4.75 85.56 0.41 11.84 16 7 C -0.51 -28.76 7.82 25.60 0.20 -28.56 16 8 H 0.07 3.97 5.55 -2.91 -0.02 3.96 16 9 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 10 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 11 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 C 0.00 0.04 4.19 44.91 0.19 0.23 16 16 C -0.14 -4.41 9.31 30.62 0.29 -4.12 16 17 C -0.17 -6.56 9.41 30.62 0.29 -6.27 16 18 H 0.11 1.87 8.06 -2.91 -0.02 1.85 16 19 H 0.10 1.94 7.84 -2.91 -0.02 1.91 16 20 H 0.11 2.56 8.06 -2.91 -0.02 2.53 16 21 H 0.07 2.03 6.26 -2.39 -0.01 2.01 16 22 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 24 H 0.06 2.27 7.84 -2.39 -0.02 2.25 16 25 H -0.04 -2.28 8.02 -2.39 -0.02 -2.30 16 26 H 0.00 -0.14 7.76 -2.39 -0.02 -0.16 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.09 3.99 5.32 -2.39 -0.01 3.98 16 Total: -1.00 -63.17 265.77 3.00 -60.17 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.06 Total: 9.88 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.63 Total: -32.44 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -3.73 Total: -84.23 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.17 3.00 -60.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070592542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.558 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds