Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29824 * 118.55649 * 2 1 4 4 C 1.50142 * 123.28397 * 180.37371 * 3 2 1 5 5 N 1.46793 * 110.41748 * 343.08702 * 4 3 2 6 6 C 1.46901 * 111.13692 * 174.11520 * 5 4 3 7 7 C 1.47240 * 110.22869 * 50.61517 * 5 4 3 8 8 H 1.09001 * 109.64080 * 51.29234 * 7 5 4 9 9 C 1.53005 * 109.63339 * 171.69591 * 7 5 4 10 10 C 1.50703 * 109.47035 * 184.50150 * 9 7 5 11 11 H 1.07999 * 119.99999 * 5.10773 * 10 9 7 12 12 C 1.37872 * 119.99853 * 185.10291 * 10 9 7 13 13 N 1.31510 * 120.00319 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99736 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47028 * 90.00428 * 14 12 10 16 16 H 1.48504 * 109.47220 * 210.00054 * 14 12 10 17 17 H 1.48490 * 109.47334 * 330.00321 * 14 12 10 18 18 C 1.50311 * 118.54985 * 180.02562 * 2 1 3 19 19 H 1.08998 * 109.46603 * 269.98342 * 1 2 3 20 20 H 1.09000 * 109.46449 * 29.97962 * 1 2 3 21 21 H 1.08994 * 109.47289 * 149.97811 * 1 2 3 22 22 H 1.07992 * 118.35973 * 0.39000 * 3 2 1 23 23 H 1.09003 * 109.33713 * 103.19113 * 4 3 2 24 24 H 1.08999 * 109.33631 * 222.70247 * 4 3 2 25 25 H 1.09002 * 109.47454 * 290.13102 * 6 5 4 26 26 H 1.08999 * 109.47252 * 50.12750 * 6 5 4 27 27 H 1.09005 * 109.47131 * 170.13114 * 6 5 4 28 28 H 1.08999 * 109.46738 * 304.50168 * 9 7 5 29 29 H 1.08998 * 109.47106 * 64.50474 * 9 7 5 30 30 H 0.97000 * 120.00699 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.43067 * 43.43498 * 18 2 1 32 32 H 1.08996 * 109.39351 * 283.55155 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2450 -0.0067 0.3845 6 6 5.7064 0.0535 0.2480 7 6 3.6860 -1.1134 -0.4096 8 1 3.7379 -0.8662 -1.4700 9 6 4.4815 -2.3924 -0.1404 10 6 3.9781 -3.4950 -1.0358 11 1 3.2291 -3.2830 -1.7846 12 6 4.4736 -4.7743 -0.8993 13 7 5.3853 -5.0326 0.0126 14 14 3.8490 -6.1412 -2.0089 15 1 4.6917 -6.2118 -3.2296 16 1 3.9167 -7.4362 -1.2851 17 1 2.4423 -5.8623 -2.3939 18 6 2.2254 -1.3203 -0.0006 19 1 -0.3632 -0.0003 1.0277 20 1 -0.3632 0.8902 -0.5135 21 1 -0.3633 -0.8897 -0.5141 22 1 1.5381 2.0451 0.0065 23 1 3.9585 1.5308 -1.0107 24 1 3.9253 2.0449 0.6901 25 1 5.9716 0.0863 -0.8087 26 1 6.0811 0.9486 0.7445 27 1 6.1509 -0.8297 0.7070 28 1 5.5373 -2.2130 -0.3433 29 1 4.3565 -2.6854 0.9020 30 1 5.7342 -5.9325 0.1085 31 1 1.7430 -1.9953 -0.7076 32 1 2.1867 -1.7538 0.9987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = 6.102783 kcal Electronic energy + Delta-G solvation = -12557.832633 eV Core-core repulsion = 10518.059352 eV Total energy + Delta-G solvation = -2039.773281 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.75563 -34.40413 -33.19457 -31.03589 -28.61407 -26.90945 -24.67932 -23.68673 -22.30181 -19.45428 -17.06447 -16.45625 -15.17040 -14.67227 -14.47704 -13.83219 -13.54218 -13.14093 -12.72843 -12.28194 -12.13323 -11.93491 -11.53729 -11.38722 -11.12559 -10.89369 -10.74628 -10.38492 -10.28831 -9.84183 -9.15158 -9.02544 -8.34526 -8.29422 -7.62939 -5.99002 -4.00782 2.64483 3.32169 3.38687 3.41677 4.43145 4.66066 5.19518 5.30823 5.38237 5.60609 5.78794 5.82687 5.89636 5.94152 6.01845 6.08942 6.17394 6.23835 6.39418 6.52707 6.64175 6.83665 6.94164 7.05152 7.43741 7.55969 7.68188 7.85593 7.87380 8.07432 8.44877 9.05345 9.62484 11.12346 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.010804 C = 0.008863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.230745 B = 2590.945077 C = 3158.335338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.181 4.181 4 C 0.088 3.912 5 N -0.538 5.538 6 C 0.028 3.972 7 C 0.089 3.911 8 H 0.029 0.971 9 C 0.027 3.973 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.064 4.064 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.100 0.900 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.021 0.979 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.018 0.982 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 9.775 -0.180 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.040 4.040 5 N -0.263 5.263 6 C -0.120 4.120 7 C -0.019 4.019 8 H 0.047 0.953 9 C -0.010 4.010 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.101 4.101 19 H 0.082 0.918 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.151 9.549 0.395 10.857 hybrid contribution -0.108 -0.593 -1.441 1.561 sum -5.259 8.957 -1.046 10.439 Atomic orbital electron populations 1.20914 0.93124 1.01876 1.01652 1.21336 0.95216 0.96210 0.98145 1.21892 0.95291 0.97048 1.05722 1.20828 0.92233 0.92856 0.98059 1.62414 1.04589 1.03145 1.56168 1.22347 0.88322 1.02073 0.99237 1.21928 0.94473 0.92252 0.93197 0.95276 1.19265 0.94586 0.89199 0.97950 1.21176 1.22973 0.93499 1.17924 0.92725 1.24981 0.95152 0.98668 0.95476 1.69962 1.28959 1.20814 1.33535 0.86626 0.79278 0.81627 0.80663 1.20767 1.21232 1.19873 1.20474 0.94224 0.92891 1.02507 0.91838 0.92589 0.91891 0.88172 0.94981 0.90994 0.96067 0.92877 0.90158 0.96367 0.95298 0.93018 0.90456 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.91 36.01 0.36 -1.25 16 2 C -0.11 -1.84 5.90 -100.92 -0.59 -2.43 16 3 C -0.18 -2.90 9.50 -35.97 -0.34 -3.24 16 4 C 0.09 1.46 5.63 -5.30 -0.03 1.43 16 5 N -0.54 -10.54 4.86 -236.43 -1.15 -11.69 16 6 C 0.03 0.51 8.64 60.07 0.52 1.03 16 7 C 0.09 1.95 1.98 -67.48 -0.13 1.81 16 8 H 0.03 0.67 8.09 -51.93 -0.42 0.25 16 9 C 0.03 0.71 3.97 -27.88 -0.11 0.60 16 10 C -0.52 -14.46 8.47 -34.44 -0.29 -14.75 16 11 H 0.05 1.49 7.32 -52.49 -0.38 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 18 C -0.06 -1.28 4.97 -28.03 -0.14 -1.42 16 19 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 20 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 21 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 22 H 0.10 1.35 7.87 -52.49 -0.41 0.94 16 23 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 26 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.08 1.58 6.58 -51.93 -0.34 1.24 16 28 H 0.02 0.49 6.21 -51.93 -0.32 0.17 16 29 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.08 1.59 7.46 -51.93 -0.39 1.20 16 32 H 0.08 1.63 8.07 -51.93 -0.42 1.21 16 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -29.59 258.04 -7.59 -37.18 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.18 Total: -3.31 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.86 Total: -16.66 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.41 Total: -37.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.59 -7.59 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.281 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds