Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29824 * 118.55649 * 2 1 4 4 C 1.50142 * 123.28397 * 180.37371 * 3 2 1 5 5 N 1.46793 * 110.41748 * 343.08702 * 4 3 2 6 6 C 1.46901 * 111.13692 * 174.11520 * 5 4 3 7 7 C 1.47240 * 110.22869 * 50.61517 * 5 4 3 8 8 H 1.09001 * 109.64080 * 51.29234 * 7 5 4 9 9 C 1.53005 * 109.63339 * 171.69591 * 7 5 4 10 10 C 1.50703 * 109.47035 * 184.50150 * 9 7 5 11 11 H 1.07999 * 119.99999 * 5.10773 * 10 9 7 12 12 C 1.37872 * 119.99853 * 185.10291 * 10 9 7 13 13 N 1.31510 * 120.00319 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99736 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47028 * 90.00428 * 14 12 10 16 16 H 1.48504 * 109.47220 * 210.00054 * 14 12 10 17 17 H 1.48490 * 109.47334 * 330.00321 * 14 12 10 18 18 C 1.50311 * 118.54985 * 180.02562 * 2 1 3 19 19 H 1.08998 * 109.46603 * 269.98342 * 1 2 3 20 20 H 1.09000 * 109.46449 * 29.97962 * 1 2 3 21 21 H 1.08994 * 109.47289 * 149.97811 * 1 2 3 22 22 H 1.07992 * 118.35973 * 0.39000 * 3 2 1 23 23 H 1.09003 * 109.33713 * 103.19113 * 4 3 2 24 24 H 1.08999 * 109.33631 * 222.70247 * 4 3 2 25 25 H 1.09002 * 109.47454 * 290.13102 * 6 5 4 26 26 H 1.08999 * 109.47252 * 50.12750 * 6 5 4 27 27 H 1.09005 * 109.47131 * 170.13114 * 6 5 4 28 28 H 1.08999 * 109.46738 * 304.50168 * 9 7 5 29 29 H 1.08998 * 109.47106 * 64.50474 * 9 7 5 30 30 H 0.97000 * 120.00699 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.43067 * 43.43498 * 18 2 1 32 32 H 1.08996 * 109.39351 * 283.55155 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2450 -0.0067 0.3845 6 6 5.7064 0.0535 0.2480 7 6 3.6860 -1.1134 -0.4096 8 1 3.7379 -0.8662 -1.4700 9 6 4.4815 -2.3924 -0.1404 10 6 3.9781 -3.4950 -1.0358 11 1 3.2291 -3.2830 -1.7846 12 6 4.4736 -4.7743 -0.8993 13 7 5.3853 -5.0326 0.0126 14 14 3.8490 -6.1412 -2.0089 15 1 4.6917 -6.2118 -3.2296 16 1 3.9167 -7.4362 -1.2851 17 1 2.4423 -5.8623 -2.3939 18 6 2.2254 -1.3203 -0.0006 19 1 -0.3632 -0.0003 1.0277 20 1 -0.3632 0.8902 -0.5135 21 1 -0.3633 -0.8897 -0.5141 22 1 1.5381 2.0451 0.0065 23 1 3.9585 1.5308 -1.0107 24 1 3.9253 2.0449 0.6901 25 1 5.9716 0.0863 -0.8087 26 1 6.0811 0.9486 0.7445 27 1 6.1509 -0.8297 0.7070 28 1 5.5373 -2.2130 -0.3433 29 1 4.3565 -2.6854 0.9020 30 1 5.7342 -5.9325 0.1085 31 1 1.7430 -1.9953 -0.7076 32 1 2.1867 -1.7538 0.9987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -12.626240 kcal Electronic energy + Delta-G solvation = -12558.644784 eV Core-core repulsion = 10518.059352 eV Total energy + Delta-G solvation = -2040.585432 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.27511 -35.87126 -35.15575 -32.88234 -29.89127 -28.82861 -26.01705 -25.58845 -23.87205 -21.20276 -18.74555 -18.33738 -16.72117 -16.43748 -16.21384 -15.32363 -15.00689 -14.52897 -14.14537 -14.03378 -13.68566 -13.39924 -13.26087 -13.06735 -12.72367 -12.61282 -12.35964 -12.16411 -11.93370 -11.67221 -11.16973 -10.89123 -10.52146 -9.64170 -9.15395 -8.19288 -6.29435 1.37760 1.39485 1.40590 1.51682 2.40096 3.12364 3.14267 3.91900 3.98799 4.26359 4.35121 4.46913 4.51965 4.60260 4.68942 4.83288 4.84400 4.88201 5.03483 5.05536 5.10385 5.17076 5.33433 5.43506 5.65053 5.66196 5.78050 6.07019 6.12006 6.33286 6.42320 6.85484 7.38730 8.92772 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.010804 C = 0.008863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.230745 B = 2590.945077 C = 3158.335338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.129 4.129 3 C -0.173 4.173 4 C 0.081 3.919 5 N -0.552 5.552 6 C 0.031 3.969 7 C 0.098 3.902 8 H 0.018 0.982 9 C 0.038 3.962 10 C -0.534 4.534 11 H 0.058 0.942 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.962 3.038 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.060 4.060 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.137 0.863 23 H 0.039 0.961 24 H 0.100 0.900 25 H 0.018 0.982 26 H 0.088 0.912 27 H 0.052 0.948 28 H -0.003 1.003 29 H -0.006 1.006 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 11.160 -0.902 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.130 4.130 3 C -0.191 4.191 4 C -0.046 4.046 5 N -0.277 5.277 6 C -0.117 4.117 7 C -0.010 4.010 8 H 0.036 0.964 9 C 0.001 3.999 10 C -0.572 4.572 11 H 0.076 0.924 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.787 3.213 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.097 4.097 19 H 0.091 0.909 20 H 0.098 0.902 21 H 0.078 0.922 22 H 0.155 0.845 23 H 0.057 0.943 24 H 0.118 0.882 25 H 0.036 0.964 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.522 10.955 -0.330 12.754 hybrid contribution 0.395 -0.971 -1.177 1.576 sum -6.127 9.984 -1.507 11.811 Atomic orbital electron populations 1.20890 0.90472 1.02933 1.02615 1.21349 0.97099 0.94540 0.99993 1.22216 0.95101 0.98043 1.03723 1.21046 0.92772 0.91571 0.99198 1.62389 1.05364 1.04062 1.55848 1.22314 0.87697 1.02467 0.99197 1.21629 0.95177 0.91337 0.92852 0.96408 1.19066 0.94083 0.91308 0.95478 1.21529 1.23027 0.94428 1.18223 0.92375 1.25913 0.95224 1.01428 0.96967 1.70099 1.30226 1.21572 1.35246 0.85492 0.79176 0.78079 0.78597 1.19908 1.20738 1.18664 1.20312 0.93424 0.95131 1.00834 0.90852 0.90184 0.92213 0.84529 0.94271 0.88235 0.96368 0.89298 0.92944 0.98464 0.98742 0.92814 0.91683 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.91 71.24 0.71 -2.03 16 2 C -0.13 -4.14 5.90 -15.40 -0.09 -4.23 16 3 C -0.17 -4.96 9.50 26.68 0.25 -4.70 16 4 C 0.08 2.46 5.63 85.40 0.48 2.94 16 5 N -0.55 -21.36 4.86 -901.92 -4.38 -25.74 16 6 C 0.03 1.13 8.64 127.69 1.10 2.23 16 7 C 0.10 4.38 1.98 44.88 0.09 4.47 16 8 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 9 C 0.04 2.07 3.97 29.85 0.12 2.19 16 10 C -0.53 -30.68 8.47 25.60 0.22 -30.46 16 11 H 0.06 3.22 7.32 -2.91 -0.02 3.20 16 12 C 0.00 0.15 5.46 84.65 0.46 0.61 16 13 N -0.93 -57.24 13.29 21.44 0.28 -56.95 16 14 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 C -0.06 -2.43 4.97 29.75 0.15 -2.28 16 19 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.08 1.57 7.94 -2.39 -0.02 1.55 16 21 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 22 H 0.14 2.98 7.87 -2.91 -0.02 2.95 16 23 H 0.04 1.16 8.12 -2.39 -0.02 1.15 16 24 H 0.10 2.51 8.14 -2.39 -0.02 2.50 16 25 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 26 H 0.09 2.53 8.08 -2.39 -0.02 2.51 16 27 H 0.05 2.15 6.58 -2.38 -0.02 2.14 16 28 H 0.00 -0.16 6.21 -2.39 -0.01 -0.18 16 29 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 31 H 0.06 2.73 7.46 -2.39 -0.02 2.72 16 32 H 0.06 2.48 8.07 -2.39 -0.02 2.46 16 Total: -1.00 -64.82 258.04 2.48 -62.33 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.06 Total: 4.95 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.49 Total: -31.27 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -4.10 Total: -82.69 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.82 2.48 -62.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.707 kcal (2) G-P(sol) polarization free energy of solvation -64.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds