Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29821 * 118.35808 * 2 1 4 4 C 1.50306 * 122.89432 * 179.63131 * 3 2 1 5 5 C 1.53089 * 109.71707 * 16.51379 * 4 3 2 6 6 H 1.09003 * 109.63373 * 70.94136 * 5 4 3 7 7 C 1.52997 * 109.63954 * 191.34161 * 5 4 3 8 8 C 1.50697 * 109.47526 * 184.99970 * 7 5 4 9 9 H 1.07998 * 119.99627 * 0.02562 * 8 7 5 10 10 C 1.37870 * 120.00232 * 179.97438 * 8 7 5 11 11 N 1.31517 * 120.00017 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00247 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46849 * 60.00326 * 12 10 8 14 14 H 1.48499 * 109.47185 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47044 * 300.00823 * 12 10 8 16 16 N 1.47170 * 108.32895 * 310.98937 * 5 4 3 17 17 C 1.46900 * 111.09260 * 305.53471 * 16 5 4 18 18 C 1.46842 * 110.25264 * 69.02262 * 16 5 4 19 19 H 1.09002 * 109.46805 * 269.98030 * 1 2 3 20 20 H 1.08994 * 109.47070 * 29.97961 * 1 2 3 21 21 H 1.09001 * 109.46903 * 149.98770 * 1 2 3 22 22 H 1.08002 * 118.55375 * 359.64480 * 3 2 1 23 23 H 1.08998 * 109.43105 * 136.59068 * 4 3 2 24 24 H 1.08995 * 109.42737 * 256.44312 * 4 3 2 25 25 H 1.09005 * 109.47056 * 305.00833 * 7 5 4 26 26 H 1.09005 * 109.46510 * 64.99942 * 7 5 4 27 27 H 0.97001 * 119.99947 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47322 * 179.10102 * 17 16 5 29 29 H 1.08994 * 109.47176 * 299.10591 * 17 16 5 30 30 H 1.09007 * 109.46744 * 59.10425 * 17 16 5 31 31 H 1.09002 * 109.33871 * 188.67724 * 18 16 5 32 32 H 1.09003 * 109.33258 * 69.00710 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1237 1.1424 0.0000 4 6 3.6220 1.2613 0.0081 5 6 4.2484 -0.0764 -0.3939 6 1 4.0759 -0.2575 -1.4548 7 6 5.7526 -0.0441 -0.1159 8 6 6.3851 -1.3136 -0.6251 9 1 5.7752 -2.0679 -1.0999 10 6 7.7423 -1.5117 -0.4857 11 7 8.4850 -0.5929 0.0921 12 14 8.5264 -3.0850 -1.1175 13 1 8.2954 -3.2006 -2.5799 14 1 9.9863 -3.0536 -0.8476 15 1 7.9207 -4.2519 -0.4270 16 7 3.6198 -1.1405 0.4051 17 6 3.7185 -0.8511 1.8420 18 6 2.2202 -1.3213 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5140 22 1 1.5341 2.0473 -0.0059 23 1 3.9284 2.0322 -0.6989 24 1 3.9587 1.5332 1.0085 25 1 6.1974 0.8123 -0.6228 26 1 5.9218 0.0410 0.9576 27 1 9.4399 -0.7324 0.1905 28 1 3.2318 -1.6460 2.4070 29 1 4.7681 -0.7912 2.1293 30 1 3.2285 0.0990 2.0556 31 1 1.7267 -1.9980 0.6972 32 1 2.1872 -1.7489 -1.0026 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = 10.560269 kcal Electronic energy + Delta-G solvation = -12643.734188 eV Core-core repulsion = 10604.154199 eV Total energy + Delta-G solvation = -2039.579990 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26411 -34.12968 -32.56882 -31.30665 -28.54375 -26.94727 -25.31079 -23.04134 -22.54866 -19.59692 -17.16150 -16.00395 -15.16352 -15.01127 -14.34007 -13.94812 -13.75396 -13.16580 -12.79255 -12.14297 -12.06918 -11.75205 -11.56915 -11.27743 -11.07906 -10.96754 -10.70468 -10.53579 -10.30304 -9.94792 -9.16642 -8.97358 -8.43651 -8.23253 -7.41582 -5.86487 -3.84440 2.47733 3.43192 3.46472 3.50530 4.58166 4.70983 5.13842 5.18821 5.50135 5.57135 5.63406 5.72420 5.74664 5.90743 5.97370 6.05944 6.09135 6.16386 6.24340 6.36786 6.60503 6.75401 6.84544 7.03289 7.24626 7.54729 7.71752 7.95225 8.04022 8.14723 8.60357 9.21064 9.77142 11.25501 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060217 B = 0.009330 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.872992 B = 3000.500307 C = 3175.552100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.169 4.169 3 C -0.153 4.153 4 C -0.127 4.127 5 C 0.091 3.909 6 H 0.071 0.929 7 C 0.030 3.970 8 C -0.492 4.492 9 H 0.059 0.941 10 C 0.050 3.950 11 N -0.905 5.905 12 Si 0.891 3.109 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.278 1.278 16 N -0.509 5.509 17 C 0.024 3.976 18 C 0.087 3.913 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.095 0.905 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.258 0.742 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.020 0.980 31 H 0.072 0.928 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 1.537 0.957 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.170 4.170 3 C -0.171 4.171 4 C -0.165 4.165 5 C -0.017 4.017 6 H 0.089 0.911 7 C -0.007 4.007 8 C -0.530 4.530 9 H 0.078 0.922 10 C -0.149 4.149 11 N -0.545 5.545 12 Si 0.720 3.280 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.204 1.204 16 N -0.230 5.230 17 C -0.124 4.124 18 C -0.042 4.042 19 H 0.078 0.922 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.113 0.887 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.159 1.103 0.919 12.243 hybrid contribution -0.026 0.054 -0.133 0.145 sum -12.185 1.156 0.786 12.265 Atomic orbital electron populations 1.20833 0.93014 1.01817 1.01374 1.21853 0.95848 0.97189 1.02146 1.22134 0.96697 0.96684 1.01612 1.21239 0.91952 1.01185 1.02140 1.21998 0.97562 0.85533 0.96612 0.91121 1.19193 0.86844 0.97351 0.97333 1.21129 0.92088 1.02976 1.36834 0.92233 1.25004 0.97536 0.96461 0.95882 1.69956 1.05752 1.34073 1.44760 0.86674 0.77872 0.84253 0.79246 1.20494 1.21640 1.20354 1.62577 1.11708 1.44753 1.03915 1.22388 1.02817 0.98242 0.88948 1.21090 0.88714 0.93001 1.01380 0.92169 0.92589 0.92151 0.88700 0.91174 0.90936 0.96300 0.96157 0.93258 0.92965 0.90266 0.96137 0.90923 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.90 36.01 0.36 -0.96 16 2 C -0.17 -2.52 5.47 -101.00 -0.55 -3.08 16 3 C -0.15 -2.41 8.85 -35.89 -0.32 -2.72 16 4 C -0.13 -2.28 4.85 -28.03 -0.14 -2.42 16 5 C 0.09 1.93 2.16 -67.52 -0.15 1.78 16 6 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 7 C 0.03 0.77 4.36 -27.89 -0.12 0.65 16 8 C -0.49 -14.02 8.87 -34.44 -0.31 -14.33 16 9 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 10 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 11 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 12 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 N -0.51 -10.15 4.79 -236.45 -1.13 -11.28 16 17 C 0.02 0.45 8.63 60.06 0.52 0.97 16 18 C 0.09 1.42 5.64 -5.28 -0.03 1.39 16 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.60 7.93 -51.93 -0.41 0.19 16 21 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 22 H 0.09 1.32 7.87 -52.49 -0.41 0.91 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.07 1.33 6.87 -51.93 -0.36 0.97 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.55 6.31 -51.93 -0.33 0.22 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.08 1.65 6.39 -51.93 -0.33 1.32 16 30 H 0.02 0.36 5.63 -51.92 -0.29 0.06 16 31 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 254.91 15.07 3.84 3.84 Total: -1.00 -30.06 254.91 -7.44 -37.50 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.04 Total: -3.23 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.83 Total: -17.34 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.40 Total: -38.05 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.06 -7.44 -37.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.058 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds