Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29821 * 118.35808 * 2 1 4 4 C 1.50306 * 122.89432 * 179.63131 * 3 2 1 5 5 C 1.53089 * 109.71707 * 16.51379 * 4 3 2 6 6 H 1.09003 * 109.63373 * 70.94136 * 5 4 3 7 7 C 1.52997 * 109.63954 * 191.34161 * 5 4 3 8 8 C 1.50697 * 109.47526 * 184.99970 * 7 5 4 9 9 H 1.07998 * 119.99627 * 0.02562 * 8 7 5 10 10 C 1.37870 * 120.00232 * 179.97438 * 8 7 5 11 11 N 1.31517 * 120.00017 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00247 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46849 * 60.00326 * 12 10 8 14 14 H 1.48499 * 109.47185 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47044 * 300.00823 * 12 10 8 16 16 N 1.47170 * 108.32895 * 310.98937 * 5 4 3 17 17 C 1.46900 * 111.09260 * 305.53471 * 16 5 4 18 18 C 1.46842 * 110.25264 * 69.02262 * 16 5 4 19 19 H 1.09002 * 109.46805 * 269.98030 * 1 2 3 20 20 H 1.08994 * 109.47070 * 29.97961 * 1 2 3 21 21 H 1.09001 * 109.46903 * 149.98770 * 1 2 3 22 22 H 1.08002 * 118.55375 * 359.64480 * 3 2 1 23 23 H 1.08998 * 109.43105 * 136.59068 * 4 3 2 24 24 H 1.08995 * 109.42737 * 256.44312 * 4 3 2 25 25 H 1.09005 * 109.47056 * 305.00833 * 7 5 4 26 26 H 1.09005 * 109.46510 * 64.99942 * 7 5 4 27 27 H 0.97001 * 119.99947 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47322 * 179.10102 * 17 16 5 29 29 H 1.08994 * 109.47176 * 299.10591 * 17 16 5 30 30 H 1.09007 * 109.46744 * 59.10425 * 17 16 5 31 31 H 1.09002 * 109.33871 * 188.67724 * 18 16 5 32 32 H 1.09003 * 109.33258 * 69.00710 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1237 1.1424 0.0000 4 6 3.6220 1.2613 0.0081 5 6 4.2484 -0.0764 -0.3939 6 1 4.0759 -0.2575 -1.4548 7 6 5.7526 -0.0441 -0.1159 8 6 6.3851 -1.3136 -0.6251 9 1 5.7752 -2.0679 -1.0999 10 6 7.7423 -1.5117 -0.4857 11 7 8.4850 -0.5929 0.0921 12 14 8.5264 -3.0850 -1.1175 13 1 8.2954 -3.2006 -2.5799 14 1 9.9863 -3.0536 -0.8476 15 1 7.9207 -4.2519 -0.4270 16 7 3.6198 -1.1405 0.4051 17 6 3.7185 -0.8511 1.8420 18 6 2.2202 -1.3213 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5140 22 1 1.5341 2.0473 -0.0059 23 1 3.9284 2.0322 -0.6989 24 1 3.9587 1.5332 1.0085 25 1 6.1974 0.8123 -0.6228 26 1 5.9218 0.0410 0.9576 27 1 9.4399 -0.7324 0.1905 28 1 3.2318 -1.6460 2.4070 29 1 4.7681 -0.7912 2.1293 30 1 3.2285 0.0990 2.0556 31 1 1.7267 -1.9980 0.6972 32 1 2.1872 -1.7489 -1.0026 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = -8.551031 kcal Electronic energy + Delta-G solvation = -12644.562916 eV Core-core repulsion = 10604.154199 eV Total energy + Delta-G solvation = -2040.408718 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.71401 -35.72974 -34.41925 -32.90903 -30.25381 -28.31836 -26.97498 -24.48708 -24.33970 -21.22324 -18.72955 -18.06736 -16.71477 -16.65989 -16.07327 -15.30941 -15.06125 -14.63225 -14.03111 -13.96864 -13.68508 -13.23924 -13.10895 -12.71517 -12.61526 -12.51134 -12.50619 -12.21438 -12.02561 -11.82728 -11.12432 -11.03495 -10.48433 -9.63485 -8.92128 -8.10634 -6.16441 1.29113 1.42030 1.45291 1.52833 2.47408 3.17068 3.30053 3.94660 4.02458 4.13744 4.30090 4.43643 4.59025 4.62208 4.66477 4.81765 4.90446 4.92024 4.94585 5.06502 5.12987 5.17622 5.19332 5.46129 5.63013 5.73141 5.88830 6.03856 6.28637 6.43576 6.48876 6.96705 7.49516 9.01224 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060217 B = 0.009330 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.872992 B = 3000.500307 C = 3175.552100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.161 4.161 3 C -0.167 4.167 4 C -0.120 4.120 5 C 0.100 3.900 6 H 0.060 0.940 7 C 0.037 3.963 8 C -0.506 4.506 9 H 0.056 0.944 10 C -0.005 4.005 11 N -0.940 5.940 12 Si 0.959 3.041 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.271 1.271 16 N -0.534 5.534 17 C 0.032 3.968 18 C 0.083 3.917 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.119 0.881 23 H 0.071 0.929 24 H 0.063 0.937 25 H -0.008 1.008 26 H -0.002 1.002 27 H 0.260 0.740 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.094 0.906 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 0.683 0.719 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.162 4.162 3 C -0.186 4.186 4 C -0.159 4.159 5 C -0.008 4.008 6 H 0.078 0.922 7 C 0.000 4.000 8 C -0.544 4.544 9 H 0.075 0.925 10 C -0.201 4.201 11 N -0.582 5.582 12 Si 0.785 3.215 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.196 1.196 16 N -0.255 5.255 17 C -0.116 4.116 18 C -0.044 4.044 19 H 0.092 0.908 20 H 0.086 0.914 21 H 0.091 0.909 22 H 0.137 0.863 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.010 0.990 26 H 0.017 0.983 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.117 0.248 0.677 14.135 hybrid contribution 0.570 0.302 -0.048 0.647 sum -13.547 0.550 0.630 13.572 Atomic orbital electron populations 1.20839 0.90015 1.03089 1.02601 1.22021 0.97881 0.95880 1.00461 1.22111 0.94908 0.98181 1.03358 1.21071 0.94114 0.99125 1.01576 1.21635 0.94791 0.88148 0.96273 0.92208 1.19031 0.90341 0.95380 0.95291 1.21452 0.92545 1.03735 1.36654 0.92530 1.25882 0.98209 0.99914 0.96097 1.70089 1.06040 1.36116 1.45944 0.85585 0.76914 0.79999 0.79005 1.19451 1.21118 1.19649 1.62446 1.14387 1.44418 1.04295 1.22289 1.01026 0.99725 0.88595 1.21190 0.86796 0.94507 1.01943 0.90817 0.91421 0.90869 0.86327 0.91068 0.91816 0.98969 0.98349 0.93162 0.90656 0.93621 0.95057 0.88774 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.90 71.24 0.71 -1.36 16 2 C -0.16 -4.34 5.47 -15.45 -0.08 -4.42 16 3 C -0.17 -4.89 8.85 26.74 0.24 -4.65 16 4 C -0.12 -4.31 4.85 29.75 0.14 -4.17 16 5 C 0.10 4.29 2.16 44.89 0.10 4.39 16 6 H 0.06 2.66 8.09 -2.39 -0.02 2.64 16 7 C 0.04 1.97 4.36 29.85 0.13 2.10 16 8 C -0.51 -29.48 8.87 25.60 0.23 -29.25 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 10 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 11 N -0.94 -58.50 13.29 21.44 0.28 -58.22 16 12 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 16 N -0.53 -21.01 4.79 -901.99 -4.32 -25.33 16 17 C 0.03 1.17 8.63 127.69 1.10 2.27 16 18 C 0.08 2.54 5.64 85.39 0.48 3.02 16 19 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 20 H 0.07 1.17 7.93 -2.39 -0.02 1.15 16 21 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 22 H 0.12 2.93 7.87 -2.91 -0.02 2.91 16 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.06 2.36 6.87 -2.39 -0.02 2.35 16 25 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 26 H 0.00 -0.10 6.31 -2.38 -0.02 -0.12 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 29 H 0.04 1.95 6.39 -2.39 -0.02 1.94 16 30 H 0.03 1.06 5.63 -2.38 -0.01 1.05 16 31 H 0.09 2.47 7.96 -2.39 -0.02 2.45 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -64.98 254.91 2.57 -62.42 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.07 Total: 4.96 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 3.50 Total: -31.89 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -4.03 Total: -83.55 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -64.98 2.57 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.865 kcal (2) G-P(sol) polarization free energy of solvation -64.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds