Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46868 * 2 1 4 4 C 1.29824 * 118.35656 * 95.00597 * 3 2 1 5 5 C 1.50308 * 122.88973 * 179.62698 * 4 3 2 6 6 C 1.53084 * 109.72180 * 16.46919 * 5 4 3 7 7 H 1.08997 * 109.63530 * 70.73115 * 6 5 4 8 8 C 1.50700 * 109.63924 * 191.34142 * 6 5 4 9 9 H 1.08000 * 119.99867 * 118.97579 * 8 6 5 10 10 C 1.37867 * 120.00048 * 298.97899 * 8 6 5 11 11 N 1.31512 * 120.00348 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00086 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46760 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47253 * 119.99906 * 12 10 8 15 15 H 1.48504 * 109.47237 * 240.00165 * 12 10 8 16 16 N 1.47246 * 108.47088 * 311.03836 * 6 5 4 17 17 C 1.46901 * 110.99705 * 305.41669 * 16 6 5 18 18 C 1.46839 * 110.20395 * 68.80213 * 16 6 5 19 19 H 1.09000 * 109.47155 * 299.99958 * 1 2 3 20 20 H 1.09001 * 109.47341 * 59.99793 * 1 2 3 21 21 H 1.08996 * 109.47061 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47155 * 240.00042 * 2 1 3 23 23 H 1.08999 * 109.46944 * 119.99852 * 2 1 3 24 24 H 1.08000 * 118.55770 * 359.59665 * 4 3 2 25 25 H 1.09000 * 109.42994 * 256.39273 * 5 4 3 26 26 H 1.09000 * 109.43306 * 136.54620 * 5 4 3 27 27 H 0.97001 * 120.00090 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47401 * 59.99794 * 17 16 6 29 29 H 1.09001 * 109.46874 * 299.99807 * 17 16 6 30 30 H 1.09004 * 109.46970 * 179.97438 * 17 16 6 31 31 H 1.09004 * 109.33631 * 69.32234 * 18 16 6 32 32 H 1.09003 * 109.34015 * 188.83153 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3318 1.9690 1.1381 5 6 2.8486 3.3755 1.2557 6 6 2.5709 4.1382 -0.0422 7 1 1.5018 4.3299 -0.1327 8 6 3.3247 5.4431 -0.0341 9 1 4.0668 5.6427 -0.7929 10 6 3.0671 6.3819 0.9420 11 7 2.1638 6.1387 1.8665 12 14 4.0019 7.9992 0.9525 13 1 4.9568 8.0262 -0.1845 14 1 3.0435 9.1259 0.8216 15 1 4.7493 8.1307 2.2291 16 7 3.0231 3.3124 -1.1744 17 6 4.4301 2.9222 -1.0123 18 6 2.1624 2.1313 -1.3163 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.2034 1.3890 2.0401 25 1 3.9227 3.3528 1.4403 26 1 2.3496 3.8771 2.0849 27 1 1.9823 6.7994 2.5530 28 1 4.5442 2.3476 -0.0931 29 1 5.0515 3.8162 -0.9615 30 1 4.7382 2.3127 -1.8620 31 1 1.1750 2.4431 -1.6570 32 1 2.5976 1.4536 -2.0509 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = 9.590173 kcal Electronic energy + Delta-G solvation = -12783.606779 eV Core-core repulsion = 10743.984723 eV Total energy + Delta-G solvation = -2039.622056 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.75330 -34.46240 -32.57802 -30.64923 -28.79799 -26.53243 -25.01313 -22.85344 -22.13881 -20.00126 -16.87411 -16.16352 -15.04109 -14.62783 -14.13709 -13.78342 -13.60471 -12.93979 -12.47222 -12.28510 -11.99261 -11.64441 -11.42349 -11.00977 -10.87343 -10.67227 -10.60508 -10.47782 -10.29169 -10.07223 -9.71512 -8.87918 -8.45422 -7.93264 -7.06547 -6.00794 -4.03391 2.94251 3.31099 3.38991 3.43913 4.43282 5.15585 5.30903 5.31587 5.42365 5.66534 5.76628 5.94460 6.05444 6.14590 6.21470 6.27489 6.36126 6.46561 6.51359 6.54689 6.77994 6.91749 6.99207 7.26755 7.44891 7.65583 7.82670 7.87575 8.16944 8.35636 8.62959 9.03257 9.61478 11.07368 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057759 B = 0.010450 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.652829 B = 2678.668200 C = 2920.384636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.186 4.186 4 C -0.134 4.134 5 C -0.117 4.117 6 C 0.216 3.784 7 H 0.040 0.960 8 C -0.500 4.500 9 H 0.064 0.936 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.286 1.286 16 N -0.531 5.531 17 C 0.034 3.966 18 C 0.095 3.905 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.260 0.740 28 H 0.021 0.979 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -8.734 -2.286 9.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.188 4.188 4 C -0.152 4.152 5 C -0.155 4.155 6 C 0.110 3.890 7 H 0.058 0.942 8 C -0.539 4.539 9 H 0.082 0.918 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 N -0.253 5.253 17 C -0.115 4.115 18 C -0.033 4.033 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.342 -8.341 -2.589 8.741 hybrid contribution 0.439 0.290 1.052 1.176 sum 0.097 -8.051 -1.537 8.197 Atomic orbital electron populations 1.21722 0.95683 1.00562 1.02173 1.20562 0.95661 0.94569 1.01188 1.21633 1.03867 0.96041 0.97262 1.22539 0.98387 0.98456 0.95827 1.21208 0.99626 0.90259 1.04453 1.19353 0.96534 0.90323 0.82826 0.94201 1.21151 1.21488 0.99775 1.11484 0.91814 1.24945 0.95345 0.98448 0.95520 1.69918 1.32936 1.35092 1.15433 0.86470 0.79764 0.83583 0.77777 1.19723 1.21061 1.21189 1.62856 1.01565 1.15647 1.45190 1.22220 0.91153 1.00030 0.98083 1.20890 0.98057 0.91489 0.92909 0.92794 0.92654 0.93406 0.92239 0.92534 0.89767 0.92542 0.88556 0.93060 0.96064 0.91160 0.94159 0.91137 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.16 0.37 -1.57 16 2 C -0.08 -1.21 5.97 -27.88 -0.17 -1.38 16 3 C -0.19 -3.45 4.73 -101.00 -0.48 -3.92 16 4 C -0.13 -2.73 8.86 -35.89 -0.32 -3.05 16 5 C -0.12 -2.80 4.45 -28.03 -0.12 -2.93 16 6 C 0.22 5.53 2.20 -68.63 -0.15 5.38 16 7 H 0.04 1.14 8.08 -51.93 -0.42 0.72 16 8 C -0.50 -13.81 7.94 -34.44 -0.27 -14.08 16 9 H 0.06 1.77 7.05 -52.49 -0.37 1.40 16 10 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 11 N -0.89 -25.47 11.55 55.43 0.64 -24.83 16 12 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 N -0.53 -11.92 5.04 -237.78 -1.20 -13.11 16 17 C 0.03 0.69 8.67 60.07 0.52 1.21 16 18 C 0.10 1.83 5.65 -5.28 -0.03 1.80 16 19 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 23 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 24 H 0.08 1.59 7.81 -52.49 -0.41 1.18 16 25 H 0.06 1.39 6.89 -51.93 -0.36 1.03 16 26 H 0.10 2.55 6.54 -51.93 -0.34 2.21 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.43 5.68 -51.93 -0.29 0.14 16 29 H 0.07 1.50 6.81 -51.93 -0.35 1.15 16 30 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 LS Contribution 252.84 15.07 3.81 3.81 Total: -1.00 -28.06 252.84 -7.55 -35.61 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.03 Total: -0.81 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.75 Total: -17.02 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.56 Total: -37.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.06 -7.55 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.198 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds