Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46868 * 2 1 4 4 C 1.29824 * 118.35656 * 95.00597 * 3 2 1 5 5 C 1.50308 * 122.88973 * 179.62698 * 4 3 2 6 6 C 1.53084 * 109.72180 * 16.46919 * 5 4 3 7 7 H 1.08997 * 109.63530 * 70.73115 * 6 5 4 8 8 C 1.50700 * 109.63924 * 191.34142 * 6 5 4 9 9 H 1.08000 * 119.99867 * 118.97579 * 8 6 5 10 10 C 1.37867 * 120.00048 * 298.97899 * 8 6 5 11 11 N 1.31512 * 120.00348 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00086 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46760 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47253 * 119.99906 * 12 10 8 15 15 H 1.48504 * 109.47237 * 240.00165 * 12 10 8 16 16 N 1.47246 * 108.47088 * 311.03836 * 6 5 4 17 17 C 1.46901 * 110.99705 * 305.41669 * 16 6 5 18 18 C 1.46839 * 110.20395 * 68.80213 * 16 6 5 19 19 H 1.09000 * 109.47155 * 299.99958 * 1 2 3 20 20 H 1.09001 * 109.47341 * 59.99793 * 1 2 3 21 21 H 1.08996 * 109.47061 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47155 * 240.00042 * 2 1 3 23 23 H 1.08999 * 109.46944 * 119.99852 * 2 1 3 24 24 H 1.08000 * 118.55770 * 359.59665 * 4 3 2 25 25 H 1.09000 * 109.42994 * 256.39273 * 5 4 3 26 26 H 1.09000 * 109.43306 * 136.54620 * 5 4 3 27 27 H 0.97001 * 120.00090 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47401 * 59.99794 * 17 16 6 29 29 H 1.09001 * 109.46874 * 299.99807 * 17 16 6 30 30 H 1.09004 * 109.46970 * 179.97438 * 17 16 6 31 31 H 1.09004 * 109.33631 * 69.32234 * 18 16 6 32 32 H 1.09003 * 109.34015 * 188.83153 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3318 1.9690 1.1381 5 6 2.8486 3.3755 1.2557 6 6 2.5709 4.1382 -0.0422 7 1 1.5018 4.3299 -0.1327 8 6 3.3247 5.4431 -0.0341 9 1 4.0668 5.6427 -0.7929 10 6 3.0671 6.3819 0.9420 11 7 2.1638 6.1387 1.8665 12 14 4.0019 7.9992 0.9525 13 1 4.9568 8.0262 -0.1845 14 1 3.0435 9.1259 0.8216 15 1 4.7493 8.1307 2.2291 16 7 3.0231 3.3124 -1.1744 17 6 4.4301 2.9222 -1.0123 18 6 2.1624 2.1313 -1.3163 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.2034 1.3890 2.0401 25 1 3.9227 3.3528 1.4403 26 1 2.3496 3.8771 2.0849 27 1 1.9823 6.7994 2.5530 28 1 4.5442 2.3476 -0.0931 29 1 5.0515 3.8162 -0.9615 30 1 4.7382 2.3127 -1.8620 31 1 1.1750 2.4431 -1.6570 32 1 2.5976 1.4536 -2.0509 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -7.872797 kcal Electronic energy + Delta-G solvation = -12784.364030 eV Core-core repulsion = 10743.984723 eV Total energy + Delta-G solvation = -2040.379307 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45157 -36.00318 -34.54588 -32.30345 -30.44221 -28.28086 -26.84845 -24.51233 -23.63543 -21.73007 -18.67641 -18.11467 -16.91888 -16.18230 -15.81453 -15.31755 -15.25595 -14.48511 -14.13525 -13.76395 -13.70828 -13.24166 -12.90406 -12.86513 -12.50727 -12.44691 -12.28950 -12.19753 -11.84074 -11.72423 -11.53815 -10.87041 -10.56585 -9.54425 -8.82974 -8.12294 -6.23022 1.38295 1.41349 1.42500 1.54819 2.42512 3.16722 3.50505 4.02074 4.04866 4.39590 4.46551 4.58596 4.61872 4.71547 4.76271 4.81027 4.82622 4.96526 5.06877 5.11558 5.17632 5.26661 5.40489 5.49192 5.55677 5.72180 5.88192 6.16783 6.19783 6.45206 6.74697 6.90520 7.45997 8.94795 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057759 B = 0.010450 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.652829 B = 2678.668200 C = 2920.384636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.163 4.163 4 C -0.166 4.166 5 C -0.101 4.101 6 C 0.221 3.779 7 H 0.000 1.000 8 C -0.519 4.519 9 H 0.057 0.943 10 C 0.011 3.989 11 N -0.921 5.921 12 Si 0.961 3.039 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.280 1.280 16 N -0.546 5.546 17 C 0.039 3.961 18 C 0.088 3.912 19 H 0.039 0.961 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.018 0.982 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 -10.155 -3.215 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.165 4.165 4 C -0.184 4.184 5 C -0.141 4.141 6 C 0.114 3.886 7 H 0.018 0.982 8 C -0.557 4.557 9 H 0.075 0.925 10 C -0.188 4.188 11 N -0.561 5.561 12 Si 0.787 3.213 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.206 1.206 16 N -0.267 5.267 17 C -0.109 4.109 18 C -0.040 4.040 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.118 0.882 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.004 -9.779 -3.527 10.395 hybrid contribution 0.302 0.690 1.263 1.470 sum 0.298 -9.088 -2.264 9.371 Atomic orbital electron populations 1.21704 0.94599 1.02226 1.01421 1.20611 0.96436 0.91733 1.02879 1.21933 1.00756 0.97806 0.95958 1.22371 1.01552 0.96920 0.97571 1.20848 0.98453 0.92463 1.02300 1.19060 0.93873 0.90816 0.84856 0.98186 1.21412 1.21652 1.01177 1.11480 0.92519 1.25733 0.96163 1.01759 0.95114 1.70055 1.34031 1.36112 1.15875 0.85459 0.78543 0.79384 0.77959 1.19163 1.20641 1.20575 1.62735 1.03041 1.17310 1.43654 1.22195 0.89689 0.99661 0.99373 1.21072 0.97779 0.90967 0.94186 0.94218 0.92827 0.90562 0.89904 0.91499 0.88211 0.94025 0.91939 0.92974 0.96383 0.92902 0.90791 0.91258 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.89 71.98 0.71 -2.68 16 2 C -0.08 -2.04 5.97 29.85 0.18 -1.86 16 3 C -0.16 -5.72 4.73 -15.45 -0.07 -5.79 16 4 C -0.17 -6.73 8.86 26.74 0.24 -6.50 16 5 C -0.10 -5.04 4.45 29.75 0.13 -4.91 16 6 C 0.22 11.65 2.20 44.13 0.10 11.75 16 7 H 0.00 0.01 8.08 -2.39 -0.02 -0.01 16 8 C -0.52 -29.38 7.94 25.60 0.20 -29.17 16 9 H 0.06 3.21 7.05 -2.91 -0.02 3.19 16 10 C 0.01 0.62 5.31 84.65 0.45 1.07 16 11 N -0.92 -54.01 11.55 21.44 0.25 -53.76 16 12 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 N -0.55 -24.25 5.04 -906.20 -4.56 -28.82 16 17 C 0.04 1.56 8.67 127.69 1.11 2.66 16 18 C 0.09 3.21 5.65 85.39 0.48 3.70 16 19 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 23 H 0.07 1.64 7.84 -2.39 -0.02 1.62 16 24 H 0.10 3.70 7.81 -2.91 -0.02 3.67 16 25 H 0.04 2.12 6.89 -2.39 -0.02 2.10 16 26 H 0.06 3.48 6.54 -2.39 -0.02 3.46 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.02 0.72 5.68 -2.39 -0.01 0.70 16 29 H 0.05 2.25 6.81 -2.39 -0.02 2.24 16 30 H 0.07 2.41 8.05 -2.38 -0.02 2.40 16 31 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.09 2.87 7.97 -2.39 -0.02 2.85 16 Total: -1.00 -61.41 252.84 2.31 -59.10 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.07 Total: 8.75 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.53 Total: -31.74 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -4.32 Total: -82.58 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.41 2.31 -59.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.229 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds