Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47430 * 2 1 4 4 C 1.50699 * 109.47240 * 239.99455 * 2 1 3 5 5 H 1.07999 * 120.00426 * 240.00072 * 4 2 1 6 6 C 1.37881 * 119.99612 * 60.00641 * 4 2 1 7 7 N 1.31510 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99746 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47150 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46945 * 119.99870 * 8 6 4 11 11 H 1.48495 * 109.47184 * 239.99763 * 8 6 4 12 12 N 1.46902 * 109.46771 * 119.99693 * 2 1 3 13 13 C 1.46897 * 110.99986 * 205.20577 * 12 2 1 14 14 H 1.09000 * 109.64323 * 327.55518 * 13 12 2 15 15 C 1.53029 * 109.64140 * 87.96992 * 13 12 2 16 16 C 1.50072 * 110.14724 * 169.33366 * 15 13 12 17 17 C 1.29441 * 124.07303 * 342.86760 * 16 15 13 18 18 C 1.50074 * 124.07736 * 0.44995 * 17 16 15 19 19 C 1.53394 * 109.64514 * 207.13354 * 13 12 2 20 20 H 1.08999 * 109.47673 * 299.99907 * 1 2 3 21 21 H 1.09004 * 109.47298 * 60.00217 * 1 2 3 22 22 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00161 * 180.02562 * 7 6 4 24 24 H 1.00901 * 111.00146 * 329.15919 * 12 2 1 25 25 H 1.08995 * 109.35638 * 289.53864 * 15 13 12 26 26 H 1.08997 * 109.35502 * 49.26913 * 15 13 12 27 27 H 1.07990 * 117.96077 * 162.84722 * 16 15 13 28 28 H 1.08002 * 117.96187 * 180.46736 * 17 16 15 29 29 H 1.09007 * 109.35403 * 103.09850 * 18 17 16 30 30 H 1.09001 * 109.35349 * 222.81737 * 18 17 16 31 31 H 1.09008 * 109.63791 * 292.34954 * 19 13 12 32 32 H 1.08999 * 109.64162 * 52.98075 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 3.3649 -0.2280 1.5632 14 1 3.9169 0.0379 0.6617 15 6 3.2574 0.9930 2.4794 16 6 4.5998 1.3193 3.0654 17 6 5.6005 0.4985 3.0873 18 6 5.5610 -0.8908 2.5211 19 6 4.1087 -1.3397 2.3142 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7083 1.1608 -3.4844 24 1 1.3776 -0.5794 1.9697 25 1 2.8975 1.8458 1.9039 26 1 2.5558 0.7790 3.2856 27 1 4.7398 2.3000 3.4953 28 1 6.5210 0.8342 3.5416 29 1 6.0815 -0.9055 1.5634 30 1 6.0539 -1.5761 3.2107 31 1 3.6374 -1.5062 3.2829 32 1 4.0832 -2.2583 1.7280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080124269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = 0.009720 kcal Electronic energy + Delta-G solvation = -12520.756936 eV Core-core repulsion = 10480.719440 eV Total energy + Delta-G solvation = -2040.037496 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.36821 -35.09354 -32.35316 -30.42509 -29.74735 -26.46852 -25.09711 -22.79356 -20.87668 -20.17130 -17.43390 -16.08024 -15.84498 -14.75443 -14.03492 -13.64250 -13.46050 -13.05136 -12.71078 -12.59131 -11.88457 -11.75890 -11.34407 -10.93977 -10.72367 -10.61132 -10.34290 -10.21303 -10.00105 -9.92662 -9.51494 -9.05283 -8.69919 -8.35434 -7.14367 -5.93436 -3.96494 2.55700 3.33647 3.41324 3.46931 4.48138 4.99628 5.20801 5.28765 5.37731 5.60777 5.67307 5.70473 5.93908 5.99763 6.18567 6.24460 6.37364 6.41039 6.73907 6.79996 6.84326 6.94786 7.04129 7.12354 7.22594 7.53468 7.79963 7.97845 8.36679 8.43151 8.82323 9.11793 9.68529 11.13002 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041434 B = 0.010132 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.613876 B = 2762.941464 C = 3062.967561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.210 3.790 3 H 0.002 0.998 4 C -0.489 4.489 5 H 0.061 0.939 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.681 5.681 13 C 0.095 3.905 14 H 0.082 0.918 15 C -0.120 4.120 16 C -0.146 4.146 17 C -0.161 4.161 18 C -0.090 4.090 19 C -0.106 4.106 20 H 0.004 0.996 21 H 0.088 0.912 22 H 0.034 0.966 23 H 0.258 0.742 24 H 0.315 0.685 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -0.519 9.107 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.528 4.528 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.310 5.310 13 C -0.016 4.016 14 H 0.101 0.899 15 C -0.159 4.159 16 C -0.165 4.165 17 C -0.180 4.180 18 C -0.128 4.128 19 C -0.144 4.144 20 H 0.023 0.977 21 H 0.107 0.893 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.746 -0.963 8.585 10.375 hybrid contribution 0.112 0.678 -0.474 0.835 sum 5.858 -0.286 8.111 10.009 Atomic orbital electron populations 1.21948 0.98426 0.99640 1.00138 1.19179 0.91408 0.92124 0.87002 0.98085 1.21242 1.30053 1.11885 0.89626 0.92039 1.24968 0.95514 0.95203 0.99033 1.69892 1.37553 1.23340 1.23099 0.86496 0.78554 0.79660 0.83035 1.19766 1.21168 1.21269 1.60776 1.01721 1.61162 1.07315 1.21524 0.92431 0.90997 0.96617 0.89942 1.21279 0.94871 1.00661 0.99109 1.22040 0.95681 0.98627 1.00139 1.22023 0.98156 0.96440 1.01338 1.20526 0.98039 0.93812 1.00407 1.21673 0.93537 0.99301 0.99883 0.97669 0.89346 0.94689 0.93221 0.86892 0.91287 0.91503 0.88786 0.88653 0.91000 0.91754 0.92840 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.96 37.16 0.33 -3.18 16 2 C 0.21 5.35 2.43 -68.86 -0.17 5.18 16 3 H 0.00 0.04 7.46 -51.93 -0.39 -0.35 16 4 C -0.49 -13.74 8.52 -34.44 -0.29 -14.03 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.49 5.30 -17.82 -0.09 1.39 16 7 N -0.90 -26.04 11.32 55.43 0.63 -25.42 16 8 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.68 -14.65 6.07 -100.73 -0.61 -15.27 16 13 C 0.10 1.82 2.29 -67.49 -0.15 1.67 16 14 H 0.08 1.82 7.62 -51.93 -0.40 1.43 16 15 C -0.12 -2.02 5.45 -28.17 -0.15 -2.17 16 16 C -0.15 -2.16 9.81 -35.90 -0.35 -2.51 16 17 C -0.16 -2.24 9.81 -35.90 -0.35 -2.60 16 18 C -0.09 -1.27 6.12 -27.97 -0.17 -1.44 16 19 C -0.11 -1.72 5.67 -26.31 -0.15 -1.87 16 20 H 0.00 0.09 8.12 -51.93 -0.42 -0.33 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.31 6.18 7.90 -39.29 -0.31 5.87 16 25 H 0.07 1.24 7.81 -51.93 -0.41 0.84 16 26 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 27 H 0.09 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.82 8.13 -51.92 -0.42 0.40 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 258.41 15.07 3.89 3.89 Total: -1.00 -28.58 258.41 -7.82 -36.39 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.15 Total: 3.16 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -1.56 Total: -19.56 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.02 Total: -40.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.58 -7.82 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080124269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.400 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds