Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47430 * 2 1 4 4 C 1.50699 * 109.47240 * 239.99455 * 2 1 3 5 5 H 1.07999 * 120.00426 * 240.00072 * 4 2 1 6 6 C 1.37881 * 119.99612 * 60.00641 * 4 2 1 7 7 N 1.31510 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99746 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47150 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46945 * 119.99870 * 8 6 4 11 11 H 1.48495 * 109.47184 * 239.99763 * 8 6 4 12 12 N 1.46902 * 109.46771 * 119.99693 * 2 1 3 13 13 C 1.46897 * 110.99986 * 205.20577 * 12 2 1 14 14 H 1.09000 * 109.64323 * 327.55518 * 13 12 2 15 15 C 1.53029 * 109.64140 * 87.96992 * 13 12 2 16 16 C 1.50072 * 110.14724 * 169.33366 * 15 13 12 17 17 C 1.29441 * 124.07303 * 342.86760 * 16 15 13 18 18 C 1.50074 * 124.07736 * 0.44995 * 17 16 15 19 19 C 1.53394 * 109.64514 * 207.13354 * 13 12 2 20 20 H 1.08999 * 109.47673 * 299.99907 * 1 2 3 21 21 H 1.09004 * 109.47298 * 60.00217 * 1 2 3 22 22 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00161 * 180.02562 * 7 6 4 24 24 H 1.00901 * 111.00146 * 329.15919 * 12 2 1 25 25 H 1.08995 * 109.35638 * 289.53864 * 15 13 12 26 26 H 1.08997 * 109.35502 * 49.26913 * 15 13 12 27 27 H 1.07990 * 117.96077 * 162.84722 * 16 15 13 28 28 H 1.08002 * 117.96187 * 180.46736 * 17 16 15 29 29 H 1.09007 * 109.35403 * 103.09850 * 18 17 16 30 30 H 1.09001 * 109.35349 * 222.81737 * 18 17 16 31 31 H 1.09008 * 109.63791 * 292.34954 * 19 13 12 32 32 H 1.08999 * 109.64162 * 52.98075 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 3.3649 -0.2280 1.5632 14 1 3.9169 0.0379 0.6617 15 6 3.2574 0.9930 2.4794 16 6 4.5998 1.3193 3.0654 17 6 5.6005 0.4985 3.0873 18 6 5.5610 -0.8908 2.5211 19 6 4.1087 -1.3397 2.3142 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7083 1.1608 -3.4844 24 1 1.3776 -0.5794 1.9697 25 1 2.8975 1.8458 1.9039 26 1 2.5558 0.7790 3.2856 27 1 4.7398 2.3000 3.4953 28 1 6.5210 0.8342 3.5416 29 1 6.0815 -0.9055 1.5634 30 1 6.0539 -1.5761 3.2107 31 1 3.6374 -1.5062 3.2829 32 1 4.0832 -2.2583 1.7280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080124269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = -17.471159 kcal Electronic energy + Delta-G solvation = -12521.514964 eV Core-core repulsion = 10480.719440 eV Total energy + Delta-G solvation = -2040.795523 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77606 -36.86085 -34.28792 -31.73923 -31.40239 -28.12594 -27.25586 -24.07006 -22.38216 -22.11355 -18.71412 -18.23697 -17.13815 -16.72664 -15.57074 -15.34404 -15.06778 -14.50134 -14.34836 -14.04802 -13.40256 -13.10553 -13.08276 -12.86428 -12.58896 -12.43779 -12.19515 -11.98767 -11.69728 -11.49455 -11.11187 -10.99034 -10.51046 -9.84924 -8.94259 -8.08670 -6.20007 1.39522 1.41156 1.44141 1.53613 2.43347 3.17553 3.57965 3.92441 4.02062 4.22094 4.39982 4.49242 4.63592 4.71915 4.78800 4.87717 4.95375 5.02617 5.07464 5.08880 5.11796 5.37266 5.48382 5.52571 5.71017 5.81333 5.87448 6.09024 6.33564 6.52016 6.93855 7.02497 7.49401 8.96031 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041434 B = 0.010132 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.613876 B = 2762.941464 C = 3062.967561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.216 3.784 3 H -0.031 1.031 4 C -0.508 4.508 5 H 0.049 0.951 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.093 3.907 14 H 0.044 0.956 15 C -0.114 4.114 16 C -0.164 4.164 17 C -0.153 4.153 18 C -0.091 4.091 19 C -0.100 4.100 20 H 0.031 0.969 21 H 0.062 0.938 22 H 0.034 0.966 23 H 0.260 0.740 24 H 0.327 0.673 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 -1.085 10.119 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.108 3.892 3 H -0.013 1.013 4 C -0.546 4.546 5 H 0.067 0.933 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.207 1.207 12 N -0.312 5.312 13 C -0.017 4.017 14 H 0.062 0.938 15 C -0.152 4.152 16 C -0.183 4.183 17 C -0.171 4.171 18 C -0.128 4.128 19 C -0.138 4.138 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.805 -1.532 9.617 11.880 hybrid contribution -0.204 0.853 -0.760 1.161 sum 6.601 -0.679 8.856 11.067 Atomic orbital electron populations 1.21777 0.97724 0.99520 1.00153 1.18948 0.91897 0.90348 0.88043 1.01349 1.21463 1.30268 1.11760 0.91156 0.93290 1.25726 0.95664 0.95913 1.01875 1.70012 1.38187 1.24335 1.23833 0.85511 0.78165 0.78601 0.79392 1.19438 1.20441 1.20697 1.60695 1.03051 1.60726 1.06753 1.21520 0.90835 0.93377 0.95980 0.93801 1.21125 0.96938 0.98496 0.98682 1.22073 0.94787 1.00052 1.01339 1.22272 0.98880 0.95843 1.00140 1.20571 0.96324 0.94857 1.01058 1.21605 0.95004 0.97478 0.99690 0.94998 0.91946 0.94693 0.93051 0.85568 0.93485 0.90225 0.86821 0.85741 0.91494 0.88813 0.91422 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.96 71.98 0.64 -5.95 16 2 C 0.22 11.24 2.43 44.17 0.11 11.35 16 3 H -0.03 -1.79 7.46 -2.39 -0.02 -1.81 16 4 C -0.51 -29.11 8.52 25.60 0.22 -28.89 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.34 5.30 84.66 0.45 0.79 16 7 N -0.92 -54.35 11.32 21.45 0.24 -54.10 16 8 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.68 -29.58 6.07 -472.59 -2.87 -32.45 16 13 C 0.09 3.59 2.29 45.06 0.10 3.69 16 14 H 0.04 2.01 7.62 -2.39 -0.02 1.99 16 15 C -0.11 -3.76 5.45 29.66 0.16 -3.60 16 16 C -0.16 -4.51 9.81 27.04 0.27 -4.24 16 17 C -0.15 -3.81 9.81 27.04 0.27 -3.54 16 18 C -0.09 -2.33 6.12 29.79 0.18 -2.15 16 19 C -0.10 -3.12 5.67 30.86 0.18 -2.95 16 20 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 21 H 0.06 3.42 6.07 -2.38 -0.01 3.40 16 22 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.33 12.64 7.90 -89.69 -0.71 11.94 16 25 H 0.05 1.73 7.81 -2.39 -0.02 1.72 16 26 H 0.08 2.39 7.90 -2.39 -0.02 2.37 16 27 H 0.11 2.68 8.06 -2.92 -0.02 2.66 16 28 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.93 8.13 -2.38 -0.02 1.91 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -61.52 258.41 2.34 -59.18 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.37 Total: 15.76 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 2.57 Total: -35.49 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.63 Total: -86.55 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -61.52 2.34 -59.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080124269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.712 kcal (2) G-P(sol) polarization free energy of solvation -61.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds