Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47533 * 2 1 4 4 C 1.50701 * 109.47213 * 120.00161 * 2 1 3 5 5 H 1.07999 * 120.00108 * 120.00072 * 4 2 1 6 6 C 1.37884 * 119.99735 * 299.99861 * 4 2 1 7 7 N 1.31515 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99692 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47248 * 90.00233 * 8 6 4 10 10 H 1.48511 * 109.47020 * 210.00185 * 8 6 4 11 11 H 1.48498 * 109.47642 * 330.00103 * 8 6 4 12 12 N 1.46901 * 109.47098 * 240.00072 * 2 1 3 13 13 C 1.46904 * 111.00010 * 154.85608 * 12 2 1 14 14 H 1.09004 * 109.63979 * 34.63395 * 13 12 2 15 15 C 1.53026 * 109.64052 * 274.21643 * 13 12 2 16 16 C 1.50060 * 110.14518 * 190.87769 * 15 13 12 17 17 C 1.29444 * 124.08144 * 17.13447 * 16 15 13 18 18 C 1.50067 * 124.07054 * 359.50452 * 17 16 15 19 19 C 1.53038 * 110.14158 * 17.16956 * 18 17 16 20 20 H 1.09000 * 109.47312 * 305.65499 * 1 2 3 21 21 H 1.09003 * 109.47213 * 65.65868 * 1 2 3 22 22 H 1.09004 * 109.47048 * 185.65650 * 1 2 3 23 23 H 0.97003 * 119.99550 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99955 * 30.89884 * 12 2 1 25 25 H 1.09002 * 109.35449 * 311.08993 * 15 13 12 26 26 H 1.09006 * 109.35529 * 70.67021 * 15 13 12 27 27 H 1.08003 * 117.96086 * 197.15305 * 16 15 13 28 28 H 1.07993 * 117.96678 * 179.52688 * 17 16 15 29 29 H 1.08998 * 109.35765 * 137.36286 * 18 17 16 30 30 H 1.08998 * 109.35835 * 256.94682 * 18 17 16 31 31 H 1.09002 * 109.64018 * 190.85787 * 19 18 17 32 32 H 1.08997 * 109.65846 * 70.21840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4124 10 1 1.3430 -0.9493 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 3.3656 -0.2291 -1.5623 14 1 3.9305 -0.0008 -0.6584 15 6 3.2605 1.0245 -2.4335 16 6 4.5985 1.3548 -3.0275 17 6 5.5883 0.5232 -3.0928 18 6 5.5396 -0.8842 -2.5741 19 6 4.0872 -1.3188 -2.3652 20 1 -0.3634 0.5990 0.8350 21 1 -0.3634 0.4236 -0.9363 22 1 -0.3633 -1.0227 0.1013 23 1 0.7081 1.1608 3.4845 24 1 1.3781 -0.5787 -1.9698 25 1 2.5429 0.8484 -3.2348 26 1 2.9196 1.8610 -1.8233 27 1 4.7448 2.3483 -3.4249 28 1 6.5063 0.8634 -3.5486 29 1 6.0163 -1.5508 -3.2927 30 1 6.0732 -0.9381 -1.6252 31 1 4.0617 -2.2583 -1.8130 32 1 3.5996 -1.4451 -3.3318 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080124274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -0.105468 kcal Electronic energy + Delta-G solvation = -12522.359501 eV Core-core repulsion = 10482.317011 eV Total energy + Delta-G solvation = -2040.042491 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.38817 -35.09446 -32.34434 -30.44401 -29.74469 -26.47138 -25.09084 -22.79372 -20.88430 -20.16286 -17.44521 -16.07157 -15.85334 -14.74767 -14.03791 -13.64829 -13.44577 -13.05527 -12.71817 -12.56959 -11.89604 -11.76755 -11.34872 -10.90793 -10.74563 -10.64148 -10.32050 -10.22611 -9.99644 -9.92297 -9.52132 -9.05261 -8.69634 -8.35832 -7.13882 -5.93354 -3.95921 2.55866 3.34808 3.41069 3.46084 4.48308 4.99691 5.21372 5.28278 5.38109 5.60478 5.67885 5.70761 5.93802 5.99933 6.18474 6.24265 6.36969 6.41054 6.73292 6.79032 6.84853 6.94941 7.04272 7.12168 7.22912 7.54656 7.78909 7.97722 8.36607 8.42314 8.82450 9.11768 9.68867 11.13520 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010108 C = 0.009152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.074633 B = 2769.461230 C = 3058.733970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.210 3.790 3 H 0.002 0.998 4 C -0.491 4.491 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.096 3.904 14 H 0.083 0.917 15 C -0.121 4.121 16 C -0.145 4.145 17 C -0.162 4.162 18 C -0.090 4.090 19 C -0.106 4.106 20 H 0.084 0.916 21 H 0.004 0.996 22 H 0.035 0.965 23 H 0.258 0.742 24 H 0.315 0.685 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -0.465 -9.133 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.530 4.530 5 H 0.079 0.921 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.015 4.015 14 H 0.101 0.899 15 C -0.160 4.160 16 C -0.164 4.164 17 C -0.180 4.180 18 C -0.127 4.127 19 C -0.144 4.144 20 H 0.103 0.897 21 H 0.023 0.977 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.703 -0.910 -8.609 10.366 hybrid contribution 0.132 0.675 0.484 0.840 sum 5.835 -0.235 -8.125 10.006 Atomic orbital electron populations 1.21931 0.98371 1.00505 0.99025 1.19171 0.91402 0.92132 0.86993 0.98071 1.21195 1.30212 1.11928 0.89632 0.92098 1.24966 0.95475 0.95207 0.99015 1.69900 1.37446 1.23330 1.23200 0.86551 0.78376 0.80140 0.82641 1.20911 1.21401 1.19901 1.60771 1.01715 1.61195 1.07291 1.21521 0.92525 0.90758 0.96712 0.89863 1.21287 0.94865 1.00690 0.99176 1.22040 0.95762 0.98578 1.00041 1.22023 0.98235 0.96294 1.01476 1.20458 0.97993 0.93683 1.00596 1.21601 0.93664 0.99476 0.99706 0.89727 0.97676 0.94539 0.93181 0.86897 0.91535 0.91250 0.88791 0.88667 0.91751 0.91005 0.91061 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.93 37.16 0.33 -3.10 16 2 C 0.21 5.35 2.43 -68.86 -0.17 5.18 16 3 H 0.00 0.05 7.30 -51.93 -0.38 -0.33 16 4 C -0.49 -13.79 8.51 -34.44 -0.29 -14.08 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.06 11.38 55.43 0.63 -25.43 16 8 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.68 -14.65 6.06 -100.72 -0.61 -15.26 16 13 C 0.10 1.83 2.32 -67.49 -0.16 1.67 16 14 H 0.08 1.84 7.64 -51.93 -0.40 1.44 16 15 C -0.12 -2.04 5.42 -28.18 -0.15 -2.20 16 16 C -0.15 -2.15 9.80 -35.90 -0.35 -2.50 16 17 C -0.16 -2.25 9.80 -35.90 -0.35 -2.61 16 18 C -0.09 -1.26 6.12 -28.17 -0.17 -1.43 16 19 C -0.11 -1.72 5.63 -26.51 -0.15 -1.87 16 20 H 0.08 2.27 6.24 -51.93 -0.32 1.94 16 21 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.31 6.18 7.86 -39.29 -0.31 5.87 16 25 H 0.07 1.05 7.91 -51.93 -0.41 0.64 16 26 H 0.07 1.26 7.66 -51.93 -0.40 0.87 16 27 H 0.09 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -28.57 258.10 -7.80 -36.38 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.14 Total: 3.13 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.56 Total: -19.52 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.02 Total: -40.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.57 -7.80 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080124274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.271 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds