Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47533 * 2 1 4 4 C 1.50701 * 109.47213 * 120.00161 * 2 1 3 5 5 H 1.07999 * 120.00108 * 120.00072 * 4 2 1 6 6 C 1.37884 * 119.99735 * 299.99861 * 4 2 1 7 7 N 1.31515 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99692 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47248 * 90.00233 * 8 6 4 10 10 H 1.48511 * 109.47020 * 210.00185 * 8 6 4 11 11 H 1.48498 * 109.47642 * 330.00103 * 8 6 4 12 12 N 1.46901 * 109.47098 * 240.00072 * 2 1 3 13 13 C 1.46904 * 111.00010 * 154.85608 * 12 2 1 14 14 H 1.09004 * 109.63979 * 34.63395 * 13 12 2 15 15 C 1.53026 * 109.64052 * 274.21643 * 13 12 2 16 16 C 1.50060 * 110.14518 * 190.87769 * 15 13 12 17 17 C 1.29444 * 124.08144 * 17.13447 * 16 15 13 18 18 C 1.50067 * 124.07054 * 359.50452 * 17 16 15 19 19 C 1.53038 * 110.14158 * 17.16956 * 18 17 16 20 20 H 1.09000 * 109.47312 * 305.65499 * 1 2 3 21 21 H 1.09003 * 109.47213 * 65.65868 * 1 2 3 22 22 H 1.09004 * 109.47048 * 185.65650 * 1 2 3 23 23 H 0.97003 * 119.99550 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99955 * 30.89884 * 12 2 1 25 25 H 1.09002 * 109.35449 * 311.08993 * 15 13 12 26 26 H 1.09006 * 109.35529 * 70.67021 * 15 13 12 27 27 H 1.08003 * 117.96086 * 197.15305 * 16 15 13 28 28 H 1.07993 * 117.96678 * 179.52688 * 17 16 15 29 29 H 1.08998 * 109.35765 * 137.36286 * 18 17 16 30 30 H 1.08998 * 109.35835 * 256.94682 * 18 17 16 31 31 H 1.09002 * 109.64018 * 190.85787 * 19 18 17 32 32 H 1.08997 * 109.65846 * 70.21840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4124 10 1 1.3430 -0.9493 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 3.3656 -0.2291 -1.5623 14 1 3.9305 -0.0008 -0.6584 15 6 3.2605 1.0245 -2.4335 16 6 4.5985 1.3548 -3.0275 17 6 5.5883 0.5232 -3.0928 18 6 5.5396 -0.8842 -2.5741 19 6 4.0872 -1.3188 -2.3652 20 1 -0.3634 0.5990 0.8350 21 1 -0.3634 0.4236 -0.9363 22 1 -0.3633 -1.0227 0.1013 23 1 0.7081 1.1608 3.4845 24 1 1.3781 -0.5787 -1.9698 25 1 2.5429 0.8484 -3.2348 26 1 2.9196 1.8610 -1.8233 27 1 4.7448 2.3483 -3.4249 28 1 6.5063 0.8634 -3.5486 29 1 6.0163 -1.5508 -3.2927 30 1 6.0732 -0.9381 -1.6252 31 1 4.0617 -2.2583 -1.8130 32 1 3.5996 -1.4451 -3.3318 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080124274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -17.595166 kcal Electronic energy + Delta-G solvation = -12523.117912 eV Core-core repulsion = 10482.317011 eV Total energy + Delta-G solvation = -2040.800901 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.79447 -36.86047 -34.28205 -31.75241 -31.40485 -28.12781 -27.25045 -24.07208 -22.38140 -22.10965 -18.72582 -18.22696 -17.14642 -16.72133 -15.56540 -15.34613 -15.06715 -14.49926 -14.32757 -14.06025 -13.40540 -13.10567 -13.09069 -12.84632 -12.62028 -12.45563 -12.17906 -11.98007 -11.69524 -11.49215 -11.11605 -10.98946 -10.51629 -9.84827 -8.93783 -8.08759 -6.19584 1.40419 1.41235 1.44091 1.52502 2.43414 3.17910 3.58104 3.92840 4.01983 4.21862 4.40493 4.49564 4.63581 4.72076 4.79206 4.86980 4.94820 5.02465 5.07523 5.08784 5.12298 5.37835 5.48761 5.52771 5.71223 5.81601 5.86110 6.09095 6.32789 6.52102 6.93816 7.02587 7.49578 8.96214 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010108 C = 0.009152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.074633 B = 2769.461230 C = 3058.733970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.509 4.509 5 H 0.049 0.951 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.683 5.683 13 C 0.094 3.906 14 H 0.045 0.955 15 C -0.115 4.115 16 C -0.164 4.164 17 C -0.153 4.153 18 C -0.091 4.091 19 C -0.100 4.100 20 H 0.059 0.941 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.260 0.740 24 H 0.327 0.673 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -1.050 -10.167 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 H -0.013 1.013 4 C -0.548 4.548 5 H 0.067 0.933 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.312 5.312 13 C -0.017 4.017 14 H 0.063 0.937 15 C -0.153 4.153 16 C -0.183 4.183 17 C -0.171 4.171 18 C -0.128 4.128 19 C -0.138 4.138 20 H 0.077 0.923 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.786 -1.498 -9.663 11.902 hybrid contribution -0.189 0.854 0.774 1.168 sum 6.597 -0.643 -8.889 11.088 Atomic orbital electron populations 1.21755 0.97672 0.99901 0.99477 1.18942 0.91889 0.90386 0.88028 1.01280 1.21432 1.30414 1.11815 0.91169 0.93289 1.25726 0.95631 0.95918 1.01867 1.70022 1.38108 1.24334 1.23884 0.85567 0.77993 0.79075 0.79061 1.20331 1.20711 1.19476 1.60688 1.03049 1.60762 1.06725 1.21516 0.90886 0.93187 0.96080 0.93699 1.21131 0.96951 0.98478 0.98765 1.22067 0.94902 1.00001 1.01288 1.22276 0.98899 0.95754 1.00203 1.20507 0.96285 0.94648 1.01343 1.21533 0.95140 0.97677 0.99444 0.92260 0.94806 0.94876 0.93066 0.85564 0.90304 0.93584 0.86884 0.85764 0.88776 0.91442 0.92250 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.93 71.98 0.64 -5.76 16 2 C 0.22 11.23 2.43 44.17 0.11 11.34 16 3 H -0.03 -1.75 7.30 -2.39 -0.02 -1.76 16 4 C -0.51 -29.23 8.51 25.60 0.22 -29.01 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.37 5.30 84.66 0.45 0.82 16 7 N -0.92 -54.40 11.38 21.45 0.24 -54.16 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.68 -29.55 6.06 -472.58 -2.86 -32.41 16 13 C 0.09 3.60 2.32 45.05 0.10 3.71 16 14 H 0.04 2.05 7.64 -2.38 -0.02 2.03 16 15 C -0.11 -3.81 5.42 29.66 0.16 -3.65 16 16 C -0.16 -4.53 9.80 27.03 0.27 -4.27 16 17 C -0.15 -3.81 9.80 27.04 0.27 -3.54 16 18 C -0.09 -2.31 6.12 29.66 0.18 -2.13 16 19 C -0.10 -3.10 5.63 30.74 0.17 -2.93 16 20 H 0.06 3.23 6.24 -2.39 -0.01 3.21 16 21 H 0.03 1.42 8.01 -2.39 -0.02 1.40 16 22 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.33 12.62 7.86 -89.70 -0.70 11.92 16 25 H 0.08 2.38 7.91 -2.39 -0.02 2.37 16 26 H 0.05 1.72 7.66 -2.38 -0.02 1.70 16 27 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 Total: -1.00 -61.55 258.10 2.35 -59.20 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.37 Total: 15.67 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 2.57 Total: -35.42 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.62 Total: -86.57 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -61.55 2.35 -59.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080124274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.609 kcal (2) G-P(sol) polarization free energy of solvation -61.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds