Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 115.56236 * 2 1 4 4 C 1.53068 * 117.49521 * 214.28770 * 2 1 3 5 5 C 1.53000 * 117.49976 * 145.68267 * 2 1 3 6 6 H 1.09001 * 117.50094 * 214.97816 * 5 2 1 7 7 N 1.46899 * 117.49799 * 359.97438 * 5 2 1 8 8 C 1.46899 * 110.99942 * 201.13099 * 7 5 2 9 9 C 1.52998 * 109.46987 * 185.32096 * 8 7 5 10 10 C 1.50704 * 115.55022 * 278.15773 * 9 8 7 11 11 H 1.08004 * 119.99662 * 95.07180 * 10 9 8 12 12 C 1.37878 * 120.00097 * 275.06928 * 10 9 8 13 13 N 1.31512 * 120.00077 * 8.43518 * 12 10 9 14 14 Si 1.86797 * 119.99779 * 188.42974 * 12 10 9 15 15 H 1.48499 * 109.47126 * 90.00599 * 14 12 10 16 16 H 1.48506 * 109.46876 * 210.00309 * 14 12 10 17 17 H 1.48504 * 109.47292 * 329.99874 * 14 12 10 18 18 C 1.53006 * 117.49804 * 132.45379 * 9 8 7 19 19 C 1.52995 * 117.50004 * 63.83129 * 9 8 7 20 20 H 1.09001 * 109.46919 * 279.85660 * 1 2 3 21 21 H 1.09000 * 109.46934 * 39.85734 * 1 2 3 22 22 H 1.08999 * 109.46829 * 159.85492 * 1 2 3 23 23 H 1.09004 * 117.51070 * 145.03767 * 4 2 1 24 24 H 1.08996 * 117.49752 * 0.02562 * 4 2 1 25 25 H 1.00900 * 111.00046 * 325.08096 * 7 5 2 26 26 H 1.09001 * 109.47232 * 305.32285 * 8 7 5 27 27 H 1.08999 * 109.46955 * 65.32087 * 8 7 5 28 28 H 0.96999 * 119.99905 * 185.01143 * 13 12 10 29 29 H 1.08999 * 117.50050 * 0.02562 * 18 9 8 30 30 H 1.09005 * 117.49707 * 145.01546 * 18 9 8 31 31 H 1.09002 * 117.49951 * 214.97189 * 19 9 8 32 32 H 1.08998 * 117.49793 * 0.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2367 -1.1218 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1716 -0.8750 1.2684 7 7 1.3938 -2.1144 1.4440 8 6 2.1399 -2.7978 2.5090 9 6 1.2759 -3.9123 3.1025 10 6 0.2701 -3.4745 4.1359 11 1 -0.7478 -3.2633 3.8432 12 6 0.6494 -3.3436 5.4550 13 7 1.9185 -3.4377 5.7868 14 14 -0.6393 -3.0323 6.7709 15 1 -1.1303 -4.3302 7.2997 16 1 -0.0379 -2.2433 7.8760 17 1 -1.7742 -2.2759 6.1833 18 6 1.9225 -5.2871 3.2835 19 6 0.8841 -5.0691 2.1811 20 1 -0.3633 0.1759 1.0125 21 1 -0.3633 0.7889 -0.6586 22 1 -0.3633 -0.9648 -0.3539 23 1 3.1719 -0.8765 -1.2682 24 1 1.6114 -1.8592 -1.2682 25 1 0.5539 -1.6889 1.8067 26 1 3.0526 -3.2268 2.0955 27 1 2.3963 -2.0819 3.2899 28 1 2.1783 -3.4184 6.7211 29 1 2.9636 -5.3975 2.9800 30 1 1.6206 -5.8751 4.1502 31 1 -0.1009 -5.5139 2.3227 32 1 1.2423 -5.0364 1.1522 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = 39.102652 kcal Electronic energy + Delta-G solvation = -12369.599883 eV Core-core repulsion = 10331.257584 eV Total energy + Delta-G solvation = -2038.342299 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.96100 -36.36058 -32.15856 -31.74575 -28.10225 -25.70780 -24.18649 -21.20245 -20.85588 -19.55072 -18.94835 -16.11348 -15.37957 -14.83510 -14.60582 -13.80661 -13.47954 -12.71713 -12.54656 -12.35935 -11.87580 -11.41285 -11.20139 -11.10585 -10.98874 -10.83278 -10.43850 -10.07908 -10.07514 -9.62247 -9.31958 -8.66485 -8.37003 -8.01893 -7.44277 -6.02490 -4.07800 3.29736 3.37053 3.39486 4.15450 4.42206 4.68977 5.10098 5.27524 5.32072 5.50688 5.57629 5.76891 6.01589 6.05419 6.10363 6.20606 6.24033 6.37462 6.54696 6.60857 6.63798 6.91353 6.93160 6.96835 7.20906 7.57220 7.62748 7.89032 7.99891 8.24130 8.51676 8.95991 9.58337 11.06451 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.036327 B = 0.010384 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.583842 B = 2695.906188 C = 3075.813991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.172 4.172 3 H 0.095 0.905 4 C -0.173 4.173 5 C 0.027 3.973 6 H 0.088 0.912 7 N -0.652 5.652 8 C 0.107 3.893 9 C 0.046 3.954 10 C -0.495 4.495 11 H 0.059 0.941 12 C 0.070 3.930 13 N -0.878 5.878 14 Si 0.885 3.115 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.162 4.162 19 C -0.195 4.195 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.345 0.655 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 4.346 -7.961 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 H 0.113 0.887 4 C -0.211 4.211 5 C -0.085 4.085 6 H 0.106 0.894 7 N -0.283 5.283 8 C -0.022 4.022 9 C 0.046 3.954 10 C -0.533 4.533 11 H 0.077 0.923 12 C -0.133 4.133 13 N -0.514 5.514 14 Si 0.713 3.287 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.201 4.201 19 C -0.232 4.232 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.166 0.834 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.080 3.923 -8.238 9.125 hybrid contribution -0.434 0.765 1.515 1.752 sum -0.354 4.688 -6.723 8.204 Atomic orbital electron populations 1.21223 0.92871 1.01961 1.01570 1.22561 0.95740 0.94080 1.06787 0.88676 1.23212 1.01590 1.00858 0.95478 1.22460 0.97958 0.94958 0.93076 0.89379 1.60255 1.07811 1.27978 1.32249 1.21564 0.94427 0.96233 0.89928 1.18759 0.96472 0.85440 0.94775 1.20511 0.95172 1.46125 0.91462 0.92317 1.24979 0.94940 0.94811 0.98534 1.70038 1.14779 1.49388 1.17224 0.86710 0.82036 0.78262 0.81725 1.20673 1.21398 1.19842 1.22542 0.94808 1.03758 0.98947 1.22800 0.98537 1.07765 0.94106 0.92313 0.92915 0.91760 0.89748 0.88617 0.83440 0.94135 0.94418 0.93145 0.92153 0.90472 0.91040 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.04 37.16 0.34 -1.27 16 2 C -0.17 -2.44 6.41 -90.59 -0.58 -3.02 16 3 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 4 C -0.17 -2.49 10.11 -26.70 -0.27 -2.76 16 5 C 0.03 0.45 6.20 -67.71 -0.42 0.03 16 6 H 0.09 1.50 7.91 -51.93 -0.41 1.08 16 7 N -0.65 -12.88 6.42 -106.73 -0.69 -13.56 16 8 C 0.11 2.45 5.45 -3.83 -0.02 2.43 16 9 C 0.05 1.15 1.52 -155.66 -0.24 0.91 16 10 C -0.49 -13.41 8.81 -34.44 -0.30 -13.71 16 11 H 0.06 1.59 7.83 -52.48 -0.41 1.18 16 12 C 0.07 1.92 5.38 -17.82 -0.10 1.83 16 13 N -0.88 -24.87 13.00 55.43 0.72 -24.15 16 14 Si 0.89 21.05 29.55 -169.99 -5.02 16.03 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.16 -3.93 9.46 -26.73 -0.25 -4.18 16 19 C -0.19 -4.42 9.89 -26.73 -0.26 -4.69 16 20 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.10 1.43 8.08 -51.93 -0.42 1.01 16 25 H 0.35 6.99 7.56 -39.29 -0.30 6.69 16 26 H 0.04 0.91 7.92 -51.93 -0.41 0.50 16 27 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 28 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 29 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -27.50 271.02 -8.29 -35.79 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.28 Total: 6.23 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -2.11 Total: -24.42 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.04 Total: -37.71 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.50 -8.29 -35.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.893 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds