Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 115.56236 * 2 1 4 4 C 1.53068 * 117.49521 * 214.28770 * 2 1 3 5 5 C 1.53000 * 117.49976 * 145.68267 * 2 1 3 6 6 H 1.09001 * 117.50094 * 214.97816 * 5 2 1 7 7 N 1.46899 * 117.49799 * 359.97438 * 5 2 1 8 8 C 1.46899 * 110.99942 * 201.13099 * 7 5 2 9 9 C 1.52998 * 109.46987 * 185.32096 * 8 7 5 10 10 C 1.50704 * 115.55022 * 278.15773 * 9 8 7 11 11 H 1.08004 * 119.99662 * 95.07180 * 10 9 8 12 12 C 1.37878 * 120.00097 * 275.06928 * 10 9 8 13 13 N 1.31512 * 120.00077 * 8.43518 * 12 10 9 14 14 Si 1.86797 * 119.99779 * 188.42974 * 12 10 9 15 15 H 1.48499 * 109.47126 * 90.00599 * 14 12 10 16 16 H 1.48506 * 109.46876 * 210.00309 * 14 12 10 17 17 H 1.48504 * 109.47292 * 329.99874 * 14 12 10 18 18 C 1.53006 * 117.49804 * 132.45379 * 9 8 7 19 19 C 1.52995 * 117.50004 * 63.83129 * 9 8 7 20 20 H 1.09001 * 109.46919 * 279.85660 * 1 2 3 21 21 H 1.09000 * 109.46934 * 39.85734 * 1 2 3 22 22 H 1.08999 * 109.46829 * 159.85492 * 1 2 3 23 23 H 1.09004 * 117.51070 * 145.03767 * 4 2 1 24 24 H 1.08996 * 117.49752 * 0.02562 * 4 2 1 25 25 H 1.00900 * 111.00046 * 325.08096 * 7 5 2 26 26 H 1.09001 * 109.47232 * 305.32285 * 8 7 5 27 27 H 1.08999 * 109.46955 * 65.32087 * 8 7 5 28 28 H 0.96999 * 119.99905 * 185.01143 * 13 12 10 29 29 H 1.08999 * 117.50050 * 0.02562 * 18 9 8 30 30 H 1.09005 * 117.49707 * 145.01546 * 18 9 8 31 31 H 1.09002 * 117.49951 * 214.97189 * 19 9 8 32 32 H 1.08998 * 117.49793 * 0.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2367 -1.1218 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1716 -0.8750 1.2684 7 7 1.3938 -2.1144 1.4440 8 6 2.1399 -2.7978 2.5090 9 6 1.2759 -3.9123 3.1025 10 6 0.2701 -3.4745 4.1359 11 1 -0.7478 -3.2633 3.8432 12 6 0.6494 -3.3436 5.4550 13 7 1.9185 -3.4377 5.7868 14 14 -0.6393 -3.0323 6.7709 15 1 -1.1303 -4.3302 7.2997 16 1 -0.0379 -2.2433 7.8760 17 1 -1.7742 -2.2759 6.1833 18 6 1.9225 -5.2871 3.2835 19 6 0.8841 -5.0691 2.1811 20 1 -0.3633 0.1759 1.0125 21 1 -0.3633 0.7889 -0.6586 22 1 -0.3633 -0.9648 -0.3539 23 1 3.1719 -0.8765 -1.2682 24 1 1.6114 -1.8592 -1.2682 25 1 0.5539 -1.6889 1.8067 26 1 3.0526 -3.2268 2.0955 27 1 2.3963 -2.0819 3.2899 28 1 2.1783 -3.4184 6.7211 29 1 2.9636 -5.3975 2.9800 30 1 1.6206 -5.8751 4.1502 31 1 -0.1009 -5.5139 2.3227 32 1 1.2423 -5.0364 1.1522 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = 23.471828 kcal Electronic energy + Delta-G solvation = -12370.277686 eV Core-core repulsion = 10331.257584 eV Total energy + Delta-G solvation = -2039.020102 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.38234 -38.09601 -34.07596 -33.48558 -29.23599 -27.73510 -25.97536 -22.89902 -22.25946 -21.06752 -20.65627 -18.02291 -16.76001 -16.61606 -16.34978 -15.68592 -14.93389 -14.49155 -13.89302 -13.70604 -13.46049 -13.02906 -13.01684 -12.77967 -12.70819 -12.30257 -12.21585 -11.97790 -11.51403 -11.24650 -10.75032 -10.62727 -10.38783 -9.91868 -9.01662 -8.11043 -6.21707 1.40817 1.42733 1.51438 2.43197 2.95116 3.16239 3.21231 3.71952 3.93464 4.13434 4.35476 4.37146 4.51454 4.64893 4.72425 4.74904 4.97417 4.98284 5.03273 5.07169 5.08081 5.16095 5.27574 5.29240 5.52222 5.67805 5.69574 5.80105 6.36684 6.44545 6.61778 6.88793 7.46897 8.97533 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.036327 B = 0.010384 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.583842 B = 2695.906188 C = 3075.813991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.157 4.157 3 H 0.115 0.885 4 C -0.156 4.156 5 C -0.009 4.009 6 H 0.082 0.918 7 N -0.647 5.647 8 C 0.124 3.876 9 C 0.022 3.978 10 C -0.507 4.507 11 H 0.053 0.947 12 C 0.024 3.976 13 N -0.906 5.906 14 Si 0.946 3.054 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.267 1.267 18 C -0.168 4.168 19 C -0.170 4.170 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.092 0.908 25 H 0.339 0.661 26 H 0.041 0.959 27 H 0.004 0.996 28 H 0.259 0.741 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 5.073 -9.123 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 H 0.133 0.867 4 C -0.195 4.195 5 C -0.120 4.120 6 H 0.100 0.900 7 N -0.278 5.278 8 C -0.005 4.005 9 C 0.022 3.978 10 C -0.545 4.545 11 H 0.071 0.929 12 C -0.176 4.176 13 N -0.544 5.544 14 Si 0.772 3.228 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.207 4.207 19 C -0.207 4.207 20 H 0.068 0.932 21 H 0.096 0.904 22 H 0.073 0.927 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.158 0.842 26 H 0.060 0.940 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.481 4.653 -9.422 10.519 hybrid contribution -0.251 0.558 1.824 1.924 sum -0.732 5.211 -7.598 9.243 Atomic orbital electron populations 1.21243 0.92417 1.02373 1.01614 1.22699 0.96124 0.94358 1.04381 0.86702 1.23255 1.02486 1.00502 0.93208 1.22552 0.98157 0.96783 0.94483 0.89974 1.60239 1.07660 1.29215 1.30637 1.21218 0.94367 0.95150 0.89753 1.18898 0.96992 0.86344 0.95601 1.20758 0.95351 1.45997 0.92412 0.92930 1.25667 0.96655 0.94771 1.00478 1.70142 1.16322 1.50468 1.17481 0.85738 0.79800 0.78122 0.79101 1.20362 1.21295 1.19140 1.22479 0.95739 1.03373 0.99071 1.22754 0.98069 1.05556 0.94342 0.93172 0.90430 0.92712 0.87553 0.88978 0.84151 0.94037 0.97803 0.93242 0.91210 0.92459 0.90883 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.04 71.98 0.65 -2.30 16 2 C -0.16 -4.04 6.41 -10.77 -0.07 -4.11 16 3 H 0.12 2.54 8.14 -2.38 -0.02 2.53 16 4 C -0.16 -4.09 10.11 30.62 0.31 -3.79 16 5 C -0.01 -0.29 6.20 44.92 0.28 -0.01 16 6 H 0.08 2.76 7.91 -2.39 -0.02 2.74 16 7 N -0.65 -25.31 6.42 -491.57 -3.16 -28.46 16 8 C 0.12 5.75 5.45 86.30 0.47 6.22 16 9 C 0.02 1.11 1.52 -52.93 -0.08 1.03 16 10 C -0.51 -27.66 8.81 25.60 0.23 -27.43 16 11 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 12 C 0.02 1.34 5.38 84.66 0.46 1.80 16 13 N -0.91 -52.09 13.00 21.45 0.28 -51.81 16 14 Si 0.95 43.38 29.55 68.60 2.03 45.40 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 C -0.17 -8.15 9.46 30.60 0.29 -7.86 16 19 C -0.17 -7.55 9.89 30.59 0.30 -7.24 16 20 H 0.05 1.32 7.86 -2.39 -0.02 1.31 16 21 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.45 7.95 -2.39 -0.02 1.43 16 23 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.09 2.51 8.08 -2.39 -0.02 2.49 16 25 H 0.34 13.72 7.56 -89.69 -0.68 13.04 16 26 H 0.04 1.87 7.92 -2.39 -0.02 1.85 16 27 H 0.00 0.19 8.11 -2.39 -0.02 0.17 16 28 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 29 H 0.07 3.18 8.07 -2.39 -0.02 3.16 16 30 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 31 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -57.76 271.02 2.38 -55.38 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.40 Total: 23.18 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 2.83 Total: -43.68 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.88 Total: -80.27 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -57.76 2.38 -55.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.851 kcal (2) G-P(sol) polarization free energy of solvation -57.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds