Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 115.55846 * 2 1 4 4 C 1.53006 * 117.49861 * 145.68353 * 2 1 3 5 5 C 1.53007 * 60.03029 * 107.50306 * 4 2 1 6 6 H 1.08993 * 117.49811 * 252.49613 * 5 4 2 7 7 N 1.46897 * 117.49621 * 107.50046 * 5 4 2 8 8 C 1.46895 * 110.99884 * 131.62505 * 7 5 4 9 9 C 1.53000 * 109.47301 * 185.05826 * 8 7 5 10 10 C 1.50698 * 115.55130 * 39.66165 * 9 8 7 11 11 H 1.08004 * 120.00375 * 264.72295 * 10 9 8 12 12 C 1.37874 * 119.99908 * 84.71410 * 10 9 8 13 13 N 1.31512 * 120.00430 * 184.82963 * 12 10 9 14 14 Si 1.86807 * 120.00134 * 4.83420 * 12 10 9 15 15 H 1.48498 * 109.46885 * 94.73033 * 14 12 10 16 16 H 1.48497 * 109.47183 * 214.73523 * 14 12 10 17 17 H 1.48502 * 109.46619 * 334.73658 * 14 12 10 18 18 C 1.52998 * 117.49851 * 253.95884 * 9 8 7 19 19 C 1.52997 * 117.49954 * 185.33376 * 9 8 7 20 20 H 1.08996 * 109.47840 * 325.70556 * 1 2 3 21 21 H 1.09005 * 109.47339 * 85.71073 * 1 2 3 22 22 H 1.09000 * 109.47200 * 205.70144 * 1 2 3 23 23 H 1.08997 * 117.49446 * 0.02562 * 4 2 1 24 24 H 1.08997 * 117.49446 * 215.00688 * 4 2 1 25 25 H 1.00899 * 110.99986 * 255.57966 * 7 5 4 26 26 H 1.08998 * 109.47300 * 305.05762 * 8 7 5 27 27 H 1.09000 * 109.46874 * 65.06176 * 8 7 5 28 28 H 0.97004 * 120.00377 * 180.02562 * 13 12 10 29 29 H 1.09006 * 117.50266 * 359.97438 * 18 9 8 30 30 H 1.09004 * 117.50479 * 145.02151 * 18 9 8 31 31 H 1.09000 * 117.49873 * 214.97872 * 19 9 8 32 32 H 1.08997 * 117.50182 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2372 -1.1216 -0.7649 6 1 1.6125 -1.8595 -1.2681 7 7 3.4977 -0.7907 -1.4427 8 6 3.8036 -1.7708 -2.4932 9 6 5.1796 -1.4670 -3.0893 10 6 6.2357 -1.0409 -2.1024 11 1 6.4232 0.0089 -1.9316 12 6 6.9627 -1.9914 -1.4174 13 7 7.8168 -1.6223 -0.4881 14 14 6.7344 -3.8035 -1.8095 15 1 7.7619 -4.2304 -2.7929 16 1 6.8783 -4.6011 -0.5652 17 1 5.3813 -4.0193 -2.3822 18 6 5.2223 -0.8409 -4.4847 19 6 5.6299 -2.3026 -4.2892 20 1 -0.3635 0.8489 0.5790 21 1 -0.3634 0.0769 -1.0248 22 1 -0.3633 -0.9260 0.4457 23 1 1.6112 -1.8586 1.2681 24 1 3.1713 -0.8749 1.2687 25 1 3.4715 0.1455 -1.8182 26 1 3.8064 -2.7733 -2.0652 27 1 3.0475 -1.7121 -3.2762 28 1 8.3285 -2.2910 -0.0064 29 1 4.2702 -0.6458 -4.9783 30 1 6.0145 -0.1206 -4.6892 31 1 6.6901 -2.5440 -4.3649 32 1 4.9461 -3.0692 -4.6537 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854168.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = 49.351334 kcal Electronic energy + Delta-G solvation = -12397.327217 eV Core-core repulsion = 10359.429335 eV Total energy + Delta-G solvation = -2037.897883 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.97029 -36.73523 -32.48209 -31.88691 -28.07076 -25.76708 -24.20877 -21.64017 -20.74314 -20.30265 -18.76552 -16.17790 -15.58966 -14.92845 -14.30506 -13.74639 -13.50283 -13.13019 -12.73393 -12.60726 -12.34192 -11.94125 -11.47392 -11.07246 -10.98917 -10.51985 -10.43222 -10.21028 -9.95284 -9.57887 -9.34270 -8.98746 -8.41495 -8.30829 -7.41486 -5.92069 -3.89996 3.39432 3.48646 3.53132 4.14537 4.55376 4.58517 5.00424 5.16212 5.26801 5.37633 5.48875 5.59663 5.83261 5.87025 5.95364 6.03782 6.10949 6.11635 6.24791 6.26473 6.40787 6.49930 6.60947 6.65650 6.76613 7.10948 7.18534 7.83061 7.98392 8.18668 8.68007 9.10489 9.72731 11.20869 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.011501 C = 0.010096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.467040 B = 2433.894866 C = 2772.648297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.173 4.173 3 H 0.104 0.896 4 C -0.167 4.167 5 C 0.024 3.976 6 H 0.085 0.915 7 N -0.626 5.626 8 C 0.101 3.899 9 C 0.005 3.995 10 C -0.455 4.455 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.903 5.903 14 Si 0.878 3.122 15 H -0.285 1.285 16 H -0.297 1.297 17 H -0.259 1.259 18 C -0.188 4.188 19 C -0.201 4.201 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.339 0.661 26 H 0.063 0.937 27 H 0.004 0.996 28 H 0.260 0.740 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.826 0.229 -1.923 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 H 0.122 0.878 4 C -0.205 4.205 5 C -0.087 4.087 6 H 0.102 0.898 7 N -0.256 5.256 8 C -0.028 4.028 9 C 0.004 3.996 10 C -0.492 4.492 11 H 0.093 0.907 12 C -0.123 4.123 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.212 1.212 16 H -0.224 1.224 17 H -0.183 1.183 18 C -0.225 4.225 19 C -0.239 4.239 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.158 0.842 26 H 0.081 0.919 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.286 -0.146 -1.332 11.366 hybrid contribution -0.601 -0.875 -0.807 1.333 sum -11.887 -1.020 -2.139 12.121 Atomic orbital electron populations 1.21337 0.93518 1.01494 1.01233 1.22630 0.94362 0.95304 1.06946 0.87781 1.23278 1.02077 0.99856 0.95292 1.22489 0.92492 0.99837 0.93864 0.89753 1.59929 1.28165 1.05474 1.31991 1.21682 0.94972 0.95431 0.90734 1.19502 0.94396 0.98533 0.87185 1.20013 1.14711 0.94587 1.19932 0.90704 1.24858 0.94793 0.98381 0.94233 1.69904 1.26666 1.33794 1.23807 0.86890 0.79189 0.86193 0.77011 1.21202 1.22423 1.18292 1.22900 1.00754 0.95591 1.03228 1.22945 1.00647 0.93208 1.07092 0.92500 0.92773 0.92860 0.89688 0.88022 0.84154 0.91878 0.97798 0.93000 0.91379 0.89649 0.89558 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.19 37.16 0.38 -0.97 16 2 C -0.17 -2.47 6.25 -90.58 -0.57 -3.03 16 3 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 4 C -0.17 -2.66 10.10 -26.72 -0.27 -2.93 16 5 C 0.02 0.41 5.94 -67.67 -0.40 0.01 16 6 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 7 N -0.63 -12.65 6.03 -106.69 -0.64 -13.29 16 8 C 0.10 2.13 5.44 -3.83 -0.02 2.11 16 9 C 0.01 0.12 1.17 -155.66 -0.18 -0.06 16 10 C -0.45 -12.71 8.75 -34.44 -0.30 -13.01 16 11 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 12 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 13 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 14 Si 0.88 22.35 25.20 -169.99 -4.28 18.06 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 17 H -0.26 -6.21 5.23 56.52 0.30 -5.91 16 18 C -0.19 -3.83 9.88 -26.73 -0.26 -4.09 16 19 C -0.20 -4.34 7.33 -26.73 -0.20 -4.54 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 23 H 0.08 1.19 8.05 -51.93 -0.42 0.78 16 24 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 25 H 0.34 6.53 8.78 -39.29 -0.34 6.18 16 26 H 0.06 1.41 6.63 -51.93 -0.34 1.06 16 27 H 0.00 0.08 7.94 -51.93 -0.41 -0.34 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 31 H 0.09 1.95 7.14 -51.93 -0.37 1.58 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 262.80 15.07 3.96 3.96 Total: -1.00 -29.96 262.80 -7.44 -37.41 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.33 Total: 5.50 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -1.92 Total: -24.33 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.13 Total: -40.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.28 Total: 18.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.96 -7.44 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854168.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.758 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds