Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 115.55846 * 2 1 4 4 C 1.53006 * 117.49861 * 145.68353 * 2 1 3 5 5 C 1.53007 * 60.03029 * 107.50306 * 4 2 1 6 6 H 1.08993 * 117.49811 * 252.49613 * 5 4 2 7 7 N 1.46897 * 117.49621 * 107.50046 * 5 4 2 8 8 C 1.46895 * 110.99884 * 131.62505 * 7 5 4 9 9 C 1.53000 * 109.47301 * 185.05826 * 8 7 5 10 10 C 1.50698 * 115.55130 * 39.66165 * 9 8 7 11 11 H 1.08004 * 120.00375 * 264.72295 * 10 9 8 12 12 C 1.37874 * 119.99908 * 84.71410 * 10 9 8 13 13 N 1.31512 * 120.00430 * 184.82963 * 12 10 9 14 14 Si 1.86807 * 120.00134 * 4.83420 * 12 10 9 15 15 H 1.48498 * 109.46885 * 94.73033 * 14 12 10 16 16 H 1.48497 * 109.47183 * 214.73523 * 14 12 10 17 17 H 1.48502 * 109.46619 * 334.73658 * 14 12 10 18 18 C 1.52998 * 117.49851 * 253.95884 * 9 8 7 19 19 C 1.52997 * 117.49954 * 185.33376 * 9 8 7 20 20 H 1.08996 * 109.47840 * 325.70556 * 1 2 3 21 21 H 1.09005 * 109.47339 * 85.71073 * 1 2 3 22 22 H 1.09000 * 109.47200 * 205.70144 * 1 2 3 23 23 H 1.08997 * 117.49446 * 0.02562 * 4 2 1 24 24 H 1.08997 * 117.49446 * 215.00688 * 4 2 1 25 25 H 1.00899 * 110.99986 * 255.57966 * 7 5 4 26 26 H 1.08998 * 109.47300 * 305.05762 * 8 7 5 27 27 H 1.09000 * 109.46874 * 65.06176 * 8 7 5 28 28 H 0.97004 * 120.00377 * 180.02562 * 13 12 10 29 29 H 1.09006 * 117.50266 * 359.97438 * 18 9 8 30 30 H 1.09004 * 117.50479 * 145.02151 * 18 9 8 31 31 H 1.09000 * 117.49873 * 214.97872 * 19 9 8 32 32 H 1.08997 * 117.50182 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2372 -1.1216 -0.7649 6 1 1.6125 -1.8595 -1.2681 7 7 3.4977 -0.7907 -1.4427 8 6 3.8036 -1.7708 -2.4932 9 6 5.1796 -1.4670 -3.0893 10 6 6.2357 -1.0409 -2.1024 11 1 6.4232 0.0089 -1.9316 12 6 6.9627 -1.9914 -1.4174 13 7 7.8168 -1.6223 -0.4881 14 14 6.7344 -3.8035 -1.8095 15 1 7.7619 -4.2304 -2.7929 16 1 6.8783 -4.6011 -0.5652 17 1 5.3813 -4.0193 -2.3822 18 6 5.2223 -0.8409 -4.4847 19 6 5.6299 -2.3026 -4.2892 20 1 -0.3635 0.8489 0.5790 21 1 -0.3634 0.0769 -1.0248 22 1 -0.3633 -0.9260 0.4457 23 1 1.6112 -1.8586 1.2681 24 1 3.1713 -0.8749 1.2687 25 1 3.4715 0.1455 -1.8182 26 1 3.8064 -2.7733 -2.0652 27 1 3.0475 -1.7121 -3.2762 28 1 8.3285 -2.2910 -0.0064 29 1 4.2702 -0.6458 -4.9783 30 1 6.0145 -0.1206 -4.6892 31 1 6.6901 -2.5440 -4.3649 32 1 4.9461 -3.0692 -4.6537 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854168.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = 29.517883 kcal Electronic energy + Delta-G solvation = -12398.187260 eV Core-core repulsion = 10359.429335 eV Total energy + Delta-G solvation = -2038.757926 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42499 -38.29024 -34.15313 -33.88656 -29.14094 -27.78008 -25.91644 -23.31172 -22.04404 -21.56119 -20.62326 -18.17913 -17.04821 -16.71943 -15.92195 -15.27044 -15.02579 -14.68949 -14.41618 -14.08778 -13.75997 -13.26127 -12.99876 -12.82612 -12.41009 -12.22754 -12.12692 -11.95298 -11.53070 -11.19154 -10.94515 -10.74393 -10.43381 -10.17448 -8.87614 -8.16369 -6.17080 1.37309 1.40498 1.52483 2.45887 2.92655 3.06310 3.22519 3.39654 4.01709 4.07891 4.17338 4.34344 4.40182 4.46720 4.50874 4.64330 4.72576 4.87799 4.90857 4.97235 5.01243 5.11279 5.16206 5.21178 5.41806 5.48530 5.52443 5.81342 6.36722 6.51144 6.68806 6.87488 7.48794 9.00517 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.011501 C = 0.010096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.467040 B = 2433.894866 C = 2772.648297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.150 4.150 3 H 0.096 0.904 4 C -0.179 4.179 5 C 0.009 3.991 6 H 0.100 0.900 7 N -0.655 5.655 8 C 0.111 3.889 9 C -0.026 4.026 10 C -0.443 4.443 11 H 0.027 0.973 12 C 0.017 3.983 13 N -0.957 5.957 14 Si 0.937 3.063 15 H -0.279 1.279 16 H -0.306 1.306 17 H -0.230 1.230 18 C -0.167 4.167 19 C -0.197 4.197 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.106 0.894 24 H 0.070 0.930 25 H 0.339 0.661 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.259 0.741 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 -0.759 -3.455 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.169 4.169 3 H 0.115 0.885 4 C -0.217 4.217 5 C -0.101 4.101 6 H 0.118 0.882 7 N -0.285 5.285 8 C -0.018 4.018 9 C -0.027 4.027 10 C -0.481 4.481 11 H 0.046 0.954 12 C -0.179 4.179 13 N -0.599 5.599 14 Si 0.763 3.237 15 H -0.205 1.205 16 H -0.234 1.234 17 H -0.153 1.153 18 C -0.204 4.204 19 C -0.234 4.234 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.125 0.875 24 H 0.088 0.912 25 H 0.159 0.841 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.983 -1.125 -2.889 14.323 hybrid contribution 0.243 -0.425 -0.320 0.584 sum -13.740 -1.550 -3.209 14.195 Atomic orbital electron populations 1.21348 0.90684 1.02699 1.02355 1.22683 0.96282 0.94009 1.03920 0.88534 1.23291 1.01657 1.01811 0.94952 1.22584 0.91937 1.01874 0.93747 0.88215 1.59826 1.30858 1.05516 1.32303 1.21493 0.94091 0.94770 0.91493 1.19458 0.94385 1.01511 0.87373 1.20159 1.15399 0.92313 1.20278 0.95447 1.25687 0.94812 1.03098 0.94275 1.70067 1.28735 1.35179 1.25929 0.85939 0.80645 0.80513 0.76585 1.20478 1.23393 1.15274 1.22935 1.02084 0.94791 1.00552 1.22989 1.00546 0.94633 1.05269 0.91033 0.91685 0.91934 0.87546 0.91153 0.84103 0.93218 0.94717 0.93275 0.87792 0.90600 0.91047 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.19 71.98 0.73 -1.45 16 2 C -0.15 -3.98 6.25 -10.77 -0.07 -4.05 16 3 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 4 C -0.18 -5.56 10.10 30.60 0.31 -5.25 16 5 C 0.01 0.29 5.94 44.94 0.27 0.56 16 6 H 0.10 2.88 7.92 -2.39 -0.02 2.87 16 7 N -0.65 -25.92 6.03 -491.45 -2.96 -28.88 16 8 C 0.11 4.39 5.44 86.30 0.47 4.86 16 9 C -0.03 -1.17 1.17 -52.93 -0.06 -1.23 16 10 C -0.44 -25.32 8.75 25.60 0.22 -25.09 16 11 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 12 C 0.02 0.99 5.47 84.65 0.46 1.46 16 13 N -0.96 -61.98 13.96 21.45 0.30 -61.68 16 14 Si 0.94 46.13 25.20 68.60 1.73 47.85 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 17 H -0.23 -10.16 5.23 99.48 0.52 -9.64 16 18 C -0.17 -6.31 9.88 30.59 0.30 -6.01 16 19 C -0.20 -7.85 7.33 30.59 0.22 -7.63 16 20 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.06 1.11 7.90 -2.39 -0.02 1.09 16 23 H 0.11 2.79 8.05 -2.39 -0.02 2.77 16 24 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.34 12.91 8.78 -89.69 -0.79 12.13 16 26 H 0.05 2.08 6.63 -2.39 -0.02 2.07 16 27 H 0.03 1.17 7.94 -2.39 -0.02 1.15 16 28 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.10 3.23 8.08 -2.38 -0.02 3.21 16 30 H 0.08 3.00 8.14 -2.38 -0.02 2.99 16 31 H 0.07 3.06 7.14 -2.39 -0.02 3.05 16 32 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -66.40 262.80 2.04 -64.37 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.11 Total: 22.18 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 2.86 Total: -43.84 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -2.66 Total: -90.57 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.73 Total: 47.85 kcal Total: -66.40 2.04 -64.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854168.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.883 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds