Wall clock time and date at job start Mon Mar 30 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.47068 * 305.63135 * 3 2 1 5 5 C 1.50704 * 109.47094 * 185.63825 * 3 2 1 6 6 H 1.07992 * 120.00294 * 275.60462 * 5 3 2 7 7 C 1.37881 * 119.99734 * 95.60665 * 5 3 2 8 8 N 1.31516 * 119.99726 * 187.35248 * 7 5 3 9 9 Si 1.86802 * 120.00356 * 7.34780 * 7 5 3 10 10 H 1.48499 * 109.46907 * 85.66358 * 9 7 5 11 11 H 1.48496 * 109.47339 * 205.66428 * 9 7 5 12 12 H 1.48505 * 109.46984 * 325.66307 * 9 7 5 13 13 N 1.46895 * 109.47677 * 65.63868 * 3 2 1 14 14 C 1.48101 * 111.00175 * 176.29999 * 13 3 2 15 15 C 1.53285 * 85.92374 * 137.12524 * 14 13 3 16 16 C 1.52340 * 128.80340 * 116.51993 * 15 14 13 17 17 C 1.52481 * 128.80165 * 196.81070 * 15 14 13 18 18 C 1.48103 * 110.99675 * 275.88389 * 13 3 2 19 19 H 1.09001 * 109.47508 * 295.12265 * 1 2 3 20 20 H 1.08997 * 109.47290 * 55.12439 * 1 2 3 21 21 H 1.09000 * 109.47070 * 175.12143 * 1 2 3 22 22 H 1.08996 * 109.47617 * 239.99386 * 2 1 3 23 23 H 1.09007 * 109.47278 * 119.99421 * 2 1 3 24 24 H 0.97000 * 119.99818 * 180.02562 * 8 7 5 25 25 H 1.08994 * 113.79960 * 22.87193 * 14 13 3 26 26 H 1.08997 * 113.90386 * 251.38825 * 14 13 3 27 27 H 1.09000 * 117.51083 * 225.31152 * 16 15 14 28 28 H 1.08991 * 117.51365 * 10.39424 * 16 15 14 29 29 H 1.08995 * 117.54940 * 134.72105 * 17 15 14 30 30 H 1.09010 * 117.50528 * 349.57004 * 17 15 14 31 31 H 1.09003 * 113.79658 * 108.62415 * 18 13 3 32 32 H 1.08993 * 113.80335 * 337.12573 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4449 -0.1396 6 1 4.1643 1.3239 0.7336 7 6 4.1170 1.6014 -1.3823 8 7 5.4164 1.4596 -1.5269 9 14 3.0524 2.0150 -2.8605 10 1 2.8611 3.4856 -2.9368 11 1 3.7180 1.5374 -4.0990 12 1 1.7316 1.3506 -2.7206 13 7 1.6646 2.0947 1.2616 14 6 2.2181 3.4664 1.3352 15 6 0.8481 3.8718 1.8906 16 6 0.5031 4.4349 3.2634 17 6 0.2368 5.2641 2.0035 18 6 0.2848 2.6284 1.1931 19 1 -0.3634 0.4363 0.9304 20 1 -0.3634 0.5876 -0.8431 21 1 -0.3633 -1.0239 -0.0874 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 5.8221 1.5701 -2.4011 25 1 2.4446 3.9021 0.3621 26 1 3.0328 3.5762 2.0509 27 1 -0.3588 4.0117 3.7791 28 1 1.3297 4.7429 3.9035 29 1 -0.8002 5.3862 1.6909 30 1 0.8888 6.1171 1.8149 31 1 -0.4324 2.0723 1.7969 32 1 -0.0651 2.8142 0.1777 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:37 Heat of formation + Delta-G solvation = 57.226528 kcal Electronic energy + Delta-G solvation = -12766.895263 eV Core-core repulsion = 10729.338874 eV Total energy + Delta-G solvation = -2037.556389 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56545 -35.51696 -32.71009 -31.86055 -28.15613 -25.28207 -24.10708 -22.29244 -22.12719 -19.28997 -17.89312 -17.04683 -15.45852 -15.02410 -14.58099 -14.03938 -13.39649 -12.84878 -12.76448 -12.15347 -12.03250 -11.68623 -11.61271 -11.24794 -10.91835 -10.83562 -10.35312 -10.14526 -9.88545 -9.79693 -9.45241 -9.33475 -8.99825 -8.56710 -7.71312 -6.11745 -4.10355 3.22781 3.32477 3.33905 4.03506 4.36836 4.68950 4.89454 5.07744 5.22832 5.30135 5.82830 5.87248 5.94376 5.97811 6.03298 6.07516 6.11679 6.23209 6.29202 6.34841 6.50125 6.58311 6.60010 6.69249 6.85735 6.99480 7.20466 7.51146 7.80077 8.03021 8.60433 8.99409 9.52288 11.01393 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035160 B = 0.013204 C = 0.011558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.159632 B = 2119.998814 C = 2422.044363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C 0.150 3.850 4 H 0.011 0.989 5 C -0.507 4.507 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.868 3.132 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.465 5.465 14 C 0.073 3.927 15 C -0.170 4.170 16 C -0.147 4.147 17 C -0.178 4.178 18 C 0.038 3.962 19 H 0.055 0.945 20 H 0.039 0.961 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.264 0.736 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 4.249 4.044 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C 0.043 3.957 4 H 0.028 0.972 5 C -0.545 4.545 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.695 3.305 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.188 5.188 14 C -0.055 4.055 15 C -0.171 4.171 16 C -0.184 4.184 17 C -0.215 4.215 18 C -0.090 4.090 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.037 3.727 4.376 11.566 hybrid contribution -0.620 0.732 -1.689 1.942 sum -10.657 4.458 2.687 11.860 Atomic orbital electron populations 1.22044 0.98672 0.99875 1.00907 1.21617 0.92451 0.99030 1.01238 1.20330 0.96840 0.91683 0.86862 0.97177 1.20909 0.88842 1.49693 0.95061 0.90285 1.25010 0.94745 0.94724 0.98371 1.69906 1.10038 1.49302 1.24029 0.86989 0.81385 0.79174 0.82932 1.20260 1.21320 1.18885 1.68547 1.01255 1.13782 1.35215 1.23048 0.93143 0.89704 0.99616 1.23020 0.99594 0.94022 1.00440 1.22618 1.02638 1.02972 0.90136 1.22814 1.01243 0.94738 1.02730 1.23541 0.95094 0.92188 0.98221 0.92566 0.94203 0.94293 0.92837 0.92153 0.92599 0.91173 0.90399 0.89127 0.88866 0.89261 0.89005 0.90496 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.95 37.16 0.33 -2.51 16 2 C -0.10 -2.29 5.59 -26.73 -0.15 -2.44 16 3 C 0.15 3.58 1.15 -68.86 -0.08 3.50 16 4 H 0.01 0.26 4.53 -51.93 -0.24 0.02 16 5 C -0.51 -14.13 8.01 -34.44 -0.28 -14.41 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 9 Si 0.87 21.37 27.09 -169.99 -4.61 16.77 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.28 6.68 56.52 0.38 -5.90 16 13 N -0.47 -9.96 5.96 -235.00 -1.40 -11.35 16 14 C 0.07 1.49 7.06 -3.02 -0.02 1.47 16 15 C -0.17 -2.84 3.26 -154.91 -0.50 -3.34 16 16 C -0.15 -2.02 10.53 -26.99 -0.28 -2.31 16 17 C -0.18 -2.43 10.54 -26.92 -0.28 -2.72 16 18 C 0.04 0.68 5.81 -3.01 -0.02 0.67 16 19 H 0.06 0.96 5.56 -51.93 -0.29 0.67 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 25 H 0.07 1.52 7.82 -51.93 -0.41 1.12 16 26 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.08 1.26 7.00 -51.93 -0.36 0.89 16 32 H 0.06 1.09 7.54 -51.93 -0.39 0.70 16 LS Contribution 256.35 15.07 3.86 3.86 Total: -1.00 -29.25 256.35 -7.82 -37.07 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.07 Total: 0.06 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.38 Total: -20.08 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.63 Total: -37.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.61 Total: 16.77 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.25 -7.82 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.302 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds