Wall clock time and date at job start Mon Mar 30 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.47068 * 305.63135 * 3 2 1 5 5 C 1.50704 * 109.47094 * 185.63825 * 3 2 1 6 6 H 1.07992 * 120.00294 * 275.60462 * 5 3 2 7 7 C 1.37881 * 119.99734 * 95.60665 * 5 3 2 8 8 N 1.31516 * 119.99726 * 187.35248 * 7 5 3 9 9 Si 1.86802 * 120.00356 * 7.34780 * 7 5 3 10 10 H 1.48499 * 109.46907 * 85.66358 * 9 7 5 11 11 H 1.48496 * 109.47339 * 205.66428 * 9 7 5 12 12 H 1.48505 * 109.46984 * 325.66307 * 9 7 5 13 13 N 1.46895 * 109.47677 * 65.63868 * 3 2 1 14 14 C 1.48101 * 111.00175 * 176.29999 * 13 3 2 15 15 C 1.53285 * 85.92374 * 137.12524 * 14 13 3 16 16 C 1.52340 * 128.80340 * 116.51993 * 15 14 13 17 17 C 1.52481 * 128.80165 * 196.81070 * 15 14 13 18 18 C 1.48103 * 110.99675 * 275.88389 * 13 3 2 19 19 H 1.09001 * 109.47508 * 295.12265 * 1 2 3 20 20 H 1.08997 * 109.47290 * 55.12439 * 1 2 3 21 21 H 1.09000 * 109.47070 * 175.12143 * 1 2 3 22 22 H 1.08996 * 109.47617 * 239.99386 * 2 1 3 23 23 H 1.09007 * 109.47278 * 119.99421 * 2 1 3 24 24 H 0.97000 * 119.99818 * 180.02562 * 8 7 5 25 25 H 1.08994 * 113.79960 * 22.87193 * 14 13 3 26 26 H 1.08997 * 113.90386 * 251.38825 * 14 13 3 27 27 H 1.09000 * 117.51083 * 225.31152 * 16 15 14 28 28 H 1.08991 * 117.51365 * 10.39424 * 16 15 14 29 29 H 1.08995 * 117.54940 * 134.72105 * 17 15 14 30 30 H 1.09010 * 117.50528 * 349.57004 * 17 15 14 31 31 H 1.09003 * 113.79658 * 108.62415 * 18 13 3 32 32 H 1.08993 * 113.80335 * 337.12573 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4449 -0.1396 6 1 4.1643 1.3239 0.7336 7 6 4.1170 1.6014 -1.3823 8 7 5.4164 1.4596 -1.5269 9 14 3.0524 2.0150 -2.8605 10 1 2.8611 3.4856 -2.9368 11 1 3.7180 1.5374 -4.0990 12 1 1.7316 1.3506 -2.7206 13 7 1.6646 2.0947 1.2616 14 6 2.2181 3.4664 1.3352 15 6 0.8481 3.8718 1.8906 16 6 0.5031 4.4349 3.2634 17 6 0.2368 5.2641 2.0035 18 6 0.2848 2.6284 1.1931 19 1 -0.3634 0.4363 0.9304 20 1 -0.3634 0.5876 -0.8431 21 1 -0.3633 -1.0239 -0.0874 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 5.8221 1.5701 -2.4011 25 1 2.4446 3.9021 0.3621 26 1 3.0328 3.5762 2.0509 27 1 -0.3588 4.0117 3.7791 28 1 1.3297 4.7429 3.9035 29 1 -0.8002 5.3862 1.6909 30 1 0.8888 6.1171 1.8149 31 1 -0.4324 2.0723 1.7969 32 1 -0.0651 2.8142 0.1777 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:37 Heat of formation + Delta-G solvation = 37.255645 kcal Electronic energy + Delta-G solvation = -12767.761265 eV Core-core repulsion = 10729.338874 eV Total energy + Delta-G solvation = -2038.422391 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.05730 -37.03109 -34.58820 -33.61350 -29.96397 -26.82222 -25.94633 -23.86719 -23.25308 -21.10112 -19.29827 -19.11228 -17.10983 -16.39856 -16.28307 -15.68112 -14.86651 -14.78123 -14.49040 -13.85070 -13.64289 -13.22845 -13.15037 -12.76735 -12.57322 -12.28297 -11.95002 -11.86191 -11.72946 -11.31592 -10.99961 -10.92513 -10.74816 -10.63994 -9.36498 -8.33468 -6.36479 1.27322 1.29203 1.39768 2.28438 2.80108 3.02164 3.39852 3.49949 3.78792 4.10200 4.35827 4.42117 4.46805 4.63738 4.69633 4.74195 4.78125 4.81872 4.87195 5.00077 5.03145 5.06268 5.17014 5.26233 5.33003 5.33595 5.45427 5.76003 5.83196 6.12138 6.61762 6.70994 7.30002 8.83807 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035160 B = 0.013204 C = 0.011558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.159632 B = 2119.998814 C = 2422.044363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C 0.155 3.845 4 H 0.009 0.991 5 C -0.507 4.507 6 H 0.028 0.972 7 C 0.017 3.983 8 N -0.945 5.945 9 Si 0.933 3.067 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.246 1.246 13 N -0.483 5.483 14 C 0.063 3.937 15 C -0.187 4.187 16 C -0.133 4.133 17 C -0.158 4.158 18 C 0.045 3.955 19 H 0.067 0.933 20 H 0.045 0.955 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.266 0.734 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 5.067 4.066 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.047 3.953 4 H 0.027 0.973 5 C -0.546 4.546 6 H 0.047 0.953 7 C -0.181 4.181 8 N -0.585 5.585 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.169 1.169 13 N -0.206 5.206 14 C -0.065 4.065 15 C -0.188 4.188 16 C -0.170 4.170 17 C -0.195 4.195 18 C -0.083 4.083 19 H 0.086 0.914 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.315 4.546 4.417 14.747 hybrid contribution 0.469 0.483 -1.567 1.706 sum -12.847 5.029 2.850 14.087 Atomic orbital electron populations 1.21928 0.94946 1.01728 1.01802 1.21534 0.95758 0.97187 0.99991 1.20201 0.93745 0.93215 0.88142 0.97333 1.21072 0.91151 1.48933 0.93416 0.95316 1.25847 0.95963 0.94660 1.01645 1.70058 1.12174 1.51266 1.24978 0.85932 0.80175 0.79420 0.78743 1.19287 1.20961 1.16910 1.68464 1.04055 1.14513 1.33565 1.22936 0.95233 0.89835 0.98540 1.22782 0.96416 0.96046 1.03521 1.22793 1.03294 1.01562 0.89333 1.22957 1.02181 0.92767 1.01630 1.23537 0.93197 0.92647 0.98902 0.91375 0.93600 0.91965 0.94279 0.93369 0.92467 0.93444 0.92033 0.87007 0.88498 0.87024 0.88477 0.88390 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 8.95 71.98 0.64 -4.18 16 2 C -0.11 -4.56 5.59 30.59 0.17 -4.39 16 3 C 0.16 7.38 1.15 44.17 0.05 7.43 16 4 H 0.01 0.43 4.53 -2.39 -0.01 0.42 16 5 C -0.51 -29.49 8.01 25.60 0.21 -29.29 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.02 0.98 5.47 84.66 0.46 1.44 16 8 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.93 44.36 27.09 68.60 1.86 46.21 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.25 -10.84 6.68 99.48 0.66 -10.17 16 13 N -0.48 -20.52 5.96 -897.41 -5.34 -25.87 16 14 C 0.06 2.60 7.06 86.17 0.61 3.21 16 15 C -0.19 -5.81 3.26 -52.35 -0.17 -5.98 16 16 C -0.13 -3.19 10.53 30.43 0.32 -2.87 16 17 C -0.16 -3.72 10.54 30.47 0.32 -3.40 16 18 C 0.05 1.50 5.81 86.17 0.50 2.00 16 19 H 0.07 2.07 5.56 -2.39 -0.01 2.06 16 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.05 2.12 7.82 -2.39 -0.02 2.10 16 26 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 29 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.10 2.81 7.00 -2.39 -0.02 2.79 16 32 H 0.06 2.05 7.54 -2.39 -0.02 2.03 16 Total: -1.00 -65.49 256.35 0.96 -64.53 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.03 Total: 10.37 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 3.11 Total: -36.03 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -5.04 Total: -85.09 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.86 Total: 46.21 kcal Total: -65.49 0.96 -64.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.782 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds