Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.00777 * 2 1 4 4 C 1.54323 * 109.88779 * 238.89138 * 2 1 3 5 5 C 1.55139 * 103.01328 * 218.31139 * 4 2 1 6 6 H 1.09003 * 110.98564 * 277.55767 * 5 4 2 7 7 C 1.50701 * 110.99126 * 153.78270 * 5 4 2 8 8 H 1.08002 * 119.99578 * 3.14255 * 7 5 4 9 9 C 1.37876 * 120.00194 * 183.13762 * 7 5 4 10 10 N 1.31513 * 119.99868 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 119.99843 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47314 * 90.00391 * 11 9 7 13 13 H 1.48512 * 109.47237 * 210.00373 * 11 9 7 14 14 H 1.48498 * 109.47273 * 330.00197 * 11 9 7 15 15 C 1.54896 * 101.69354 * 35.66815 * 5 4 2 16 16 N 1.47442 * 109.88696 * 121.11733 * 2 1 3 17 17 C 1.46901 * 111.00185 * 356.14862 * 16 2 1 18 18 C 1.53001 * 117.49728 * 260.45716 * 17 16 2 19 19 C 1.53000 * 117.49758 * 191.83472 * 17 16 2 20 20 H 1.08998 * 109.47094 * 175.37801 * 1 2 3 21 21 H 1.08997 * 109.46949 * 295.38124 * 1 2 3 22 22 H 1.08997 * 109.47472 * 55.37923 * 1 2 3 23 23 H 1.08998 * 110.70477 * 99.92550 * 4 2 1 24 24 H 1.09000 * 110.85318 * 336.75732 * 4 2 1 25 25 H 0.97000 * 120.00172 * 179.97438 * 10 9 7 26 26 H 1.09004 * 110.37465 * 81.74264 * 15 5 4 27 27 H 1.08995 * 110.37852 * 204.07990 * 15 5 4 28 28 H 1.08998 * 115.54488 * 46.16788 * 17 16 2 29 29 H 1.08997 * 117.49813 * 0.02562 * 18 17 16 30 30 H 1.08997 * 117.49482 * 145.02333 * 18 17 16 31 31 H 1.08999 * 117.49825 * 214.98054 * 19 17 16 32 32 H 1.08996 * 117.49656 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0243 0.0000 4 6 2.0550 -0.7498 -1.2425 5 6 3.2892 -1.5133 -0.6942 6 1 4.1657 -0.8663 -0.6615 7 6 3.5649 -2.7502 -1.5098 8 1 2.9640 -2.9679 -2.3804 9 6 4.5842 -3.6038 -1.1446 10 7 5.3156 -3.3388 -0.0842 11 14 4.9255 -5.1372 -2.1552 12 1 5.9090 -4.8188 -3.2213 13 1 5.4766 -6.1982 -1.2742 14 1 3.6623 -5.6139 -2.7734 15 6 2.8196 -1.8841 0.7346 16 7 2.0316 -0.7165 1.1870 17 6 0.9240 -1.1341 2.0569 18 6 0.6230 -0.2684 3.2821 19 6 1.2774 -1.6403 3.4568 20 1 -0.3633 -1.0243 -0.0828 21 1 -0.3633 0.4405 0.9285 22 1 -0.3634 0.5838 -0.8457 23 1 2.3514 -0.0462 -2.0205 24 1 1.3069 -1.4469 -1.6198 25 1 6.0325 -3.9395 0.1730 26 1 2.1947 -2.7768 0.7090 27 1 3.6781 -2.0396 1.3879 28 1 0.0795 -1.6018 1.5509 29 1 1.2465 0.6111 3.4423 30 1 -0.4199 -0.1664 3.5822 31 1 0.6651 -2.4408 3.8720 32 1 2.3317 -1.6632 3.7324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107221459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = 24.878431 kcal Electronic energy + Delta-G solvation = -12742.846588 eV Core-core repulsion = 10703.887481 eV Total energy + Delta-G solvation = -2038.959107 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.82977 -35.49515 -32.83733 -30.21829 -29.27315 -25.35752 -23.86191 -21.96694 -21.53511 -19.48435 -18.35522 -16.30678 -16.06680 -14.72690 -14.42234 -14.02851 -13.19468 -12.95158 -12.58094 -11.97485 -11.58437 -11.43621 -11.16940 -11.11354 -10.93601 -10.66953 -10.47169 -10.29599 -9.83564 -9.73801 -9.37228 -9.09555 -8.93647 -8.39577 -7.41465 -6.01973 -4.05171 3.30286 3.37098 3.40041 4.25966 4.42114 4.64684 5.30336 5.36711 5.43303 5.51609 5.59949 5.68461 5.94411 5.97723 6.06487 6.24437 6.25436 6.34229 6.45987 6.54262 6.57401 6.76050 6.93609 7.08320 7.16783 7.65974 7.79324 7.88633 7.98638 8.11008 8.45677 8.97657 9.59023 11.07780 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046642 B = 0.010748 C = 0.009479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.172407 B = 2604.539812 C = 2953.182145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.134 4.134 5 C 0.047 3.953 6 H 0.038 0.962 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.064 3.936 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.067 3.933 16 N -0.510 5.510 17 C 0.011 3.989 18 C -0.174 4.174 19 C -0.174 4.174 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 4.082 3.353 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.037 4.037 3 H 0.089 0.911 4 C -0.172 4.172 5 C 0.028 3.972 6 H 0.056 0.944 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.525 5.525 11 Si 0.718 3.282 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.059 4.059 16 N -0.235 5.235 17 C -0.098 4.098 18 C -0.212 4.212 19 C -0.211 4.211 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.518 4.334 3.760 9.457 hybrid contribution -0.285 -1.463 -0.929 1.756 sum -7.802 2.871 2.831 8.783 Atomic orbital electron populations 1.22277 0.97211 1.01151 1.01099 1.22320 0.92581 0.98200 0.90626 0.91106 1.22957 1.00041 0.98418 0.95828 1.19752 0.91916 0.94707 0.90842 0.94428 1.21062 1.15890 1.06908 1.11498 0.92598 1.25001 0.95811 0.97959 0.95093 1.69958 1.20263 1.37413 1.24859 0.86622 0.78470 0.82971 0.80102 1.20648 1.21225 1.19984 1.23091 0.95276 0.88580 0.98956 1.63706 1.18442 1.25209 1.16107 1.22495 0.96271 1.02352 0.88702 1.22980 1.00265 0.95150 1.02822 1.22942 1.01764 0.96705 0.99709 0.92963 0.92467 0.93111 0.92877 0.92605 0.92957 0.95224 0.90171 0.89858 0.88718 0.89747 0.89504 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 7.76 37.16 0.29 -2.22 16 2 C 0.07 1.35 4.02 -66.72 -0.27 1.08 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.13 -2.85 5.91 -24.91 -0.15 -3.00 16 5 C 0.05 1.20 2.90 -89.64 -0.26 0.94 16 6 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.52 -14.28 8.52 -34.44 -0.29 -14.57 16 8 H 0.06 1.53 7.78 -52.49 -0.41 1.12 16 9 C 0.06 1.77 5.35 -17.82 -0.10 1.68 16 10 N -0.89 -25.62 12.29 55.43 0.68 -24.94 16 11 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.07 1.63 5.44 -2.25 -0.01 1.62 16 16 N -0.51 -10.50 5.31 -215.35 -1.14 -11.65 16 17 C 0.01 0.20 3.29 -67.71 -0.22 -0.02 16 18 C -0.17 -2.56 9.98 -26.73 -0.27 -2.83 16 19 C -0.17 -2.78 10.26 -26.73 -0.27 -3.05 16 20 H 0.05 0.85 6.83 -51.93 -0.35 0.49 16 21 H 0.06 0.84 6.75 -51.93 -0.35 0.49 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 1.19 7.68 -51.93 -0.40 0.79 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.03 0.75 7.70 -51.93 -0.40 0.35 16 27 H 0.08 2.14 7.57 -51.93 -0.39 1.75 16 28 H 0.08 1.45 6.09 -51.93 -0.32 1.13 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 255.72 15.07 3.85 3.85 Total: -1.00 -28.18 255.72 -8.32 -36.50 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.14 Total: 0.28 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.55 Total: -20.39 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.46 Total: -36.59 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.18 -8.32 -36.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107221459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.377 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds