Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.00777 * 2 1 4 4 C 1.54323 * 109.88779 * 238.89138 * 2 1 3 5 5 C 1.55139 * 103.01328 * 218.31139 * 4 2 1 6 6 H 1.09003 * 110.98564 * 277.55767 * 5 4 2 7 7 C 1.50701 * 110.99126 * 153.78270 * 5 4 2 8 8 H 1.08002 * 119.99578 * 3.14255 * 7 5 4 9 9 C 1.37876 * 120.00194 * 183.13762 * 7 5 4 10 10 N 1.31513 * 119.99868 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 119.99843 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47314 * 90.00391 * 11 9 7 13 13 H 1.48512 * 109.47237 * 210.00373 * 11 9 7 14 14 H 1.48498 * 109.47273 * 330.00197 * 11 9 7 15 15 C 1.54896 * 101.69354 * 35.66815 * 5 4 2 16 16 N 1.47442 * 109.88696 * 121.11733 * 2 1 3 17 17 C 1.46901 * 111.00185 * 356.14862 * 16 2 1 18 18 C 1.53001 * 117.49728 * 260.45716 * 17 16 2 19 19 C 1.53000 * 117.49758 * 191.83472 * 17 16 2 20 20 H 1.08998 * 109.47094 * 175.37801 * 1 2 3 21 21 H 1.08997 * 109.46949 * 295.38124 * 1 2 3 22 22 H 1.08997 * 109.47472 * 55.37923 * 1 2 3 23 23 H 1.08998 * 110.70477 * 99.92550 * 4 2 1 24 24 H 1.09000 * 110.85318 * 336.75732 * 4 2 1 25 25 H 0.97000 * 120.00172 * 179.97438 * 10 9 7 26 26 H 1.09004 * 110.37465 * 81.74264 * 15 5 4 27 27 H 1.08995 * 110.37852 * 204.07990 * 15 5 4 28 28 H 1.08998 * 115.54488 * 46.16788 * 17 16 2 29 29 H 1.08997 * 117.49813 * 0.02562 * 18 17 16 30 30 H 1.08997 * 117.49482 * 145.02333 * 18 17 16 31 31 H 1.08999 * 117.49825 * 214.98054 * 19 17 16 32 32 H 1.08996 * 117.49656 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0243 0.0000 4 6 2.0550 -0.7498 -1.2425 5 6 3.2892 -1.5133 -0.6942 6 1 4.1657 -0.8663 -0.6615 7 6 3.5649 -2.7502 -1.5098 8 1 2.9640 -2.9679 -2.3804 9 6 4.5842 -3.6038 -1.1446 10 7 5.3156 -3.3388 -0.0842 11 14 4.9255 -5.1372 -2.1552 12 1 5.9090 -4.8188 -3.2213 13 1 5.4766 -6.1982 -1.2742 14 1 3.6623 -5.6139 -2.7734 15 6 2.8196 -1.8841 0.7346 16 7 2.0316 -0.7165 1.1870 17 6 0.9240 -1.1341 2.0569 18 6 0.6230 -0.2684 3.2821 19 6 1.2774 -1.6403 3.4568 20 1 -0.3633 -1.0243 -0.0828 21 1 -0.3633 0.4405 0.9285 22 1 -0.3634 0.5838 -0.8457 23 1 2.3514 -0.0462 -2.0205 24 1 1.3069 -1.4469 -1.6198 25 1 6.0325 -3.9395 0.1730 26 1 2.1947 -2.7768 0.7090 27 1 3.6781 -2.0396 1.3879 28 1 0.0795 -1.6018 1.5509 29 1 1.2465 0.6111 3.4423 30 1 -0.4199 -0.1664 3.5822 31 1 0.6651 -2.4408 3.8720 32 1 2.3317 -1.6632 3.7324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107221459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = 7.451798 kcal Electronic energy + Delta-G solvation = -12743.602264 eV Core-core repulsion = 10703.887481 eV Total energy + Delta-G solvation = -2039.714783 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41217 -36.99252 -34.81560 -31.93034 -30.99797 -27.21993 -25.65798 -23.22966 -23.05116 -21.38797 -19.86329 -18.35050 -17.61263 -16.57901 -16.16531 -15.46679 -14.78358 -14.52666 -14.32597 -13.75220 -13.15372 -13.09090 -12.94278 -12.76977 -12.42553 -12.30307 -12.13275 -11.98961 -11.57178 -11.19023 -11.02012 -10.97320 -10.78852 -10.49377 -9.06102 -8.15859 -6.26967 1.39960 1.40143 1.50829 2.40550 2.94171 3.12437 3.20054 3.99732 4.06539 4.14436 4.19127 4.30527 4.49268 4.62124 4.71127 4.80201 4.81904 4.88205 4.95707 5.08509 5.13505 5.20186 5.32383 5.36599 5.44282 5.56776 5.76518 5.89332 6.13143 6.37101 6.50228 6.84181 7.41025 8.93515 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046642 B = 0.010748 C = 0.009479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.172407 B = 2604.539812 C = 2953.182145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.078 0.922 4 C -0.125 4.125 5 C 0.035 3.965 6 H 0.002 0.998 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.013 3.987 10 N -0.918 5.918 11 Si 0.957 3.043 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.090 3.910 16 N -0.519 5.519 17 C -0.016 4.016 18 C -0.142 4.142 19 C -0.181 4.181 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 4.363 3.350 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 H 0.096 0.904 4 C -0.164 4.164 5 C 0.015 3.985 6 H 0.020 0.980 7 C -0.573 4.573 8 H 0.073 0.927 9 C -0.186 4.186 10 N -0.556 5.556 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.037 4.037 16 N -0.244 5.244 17 C -0.125 4.125 18 C -0.179 4.179 19 C -0.218 4.218 20 H 0.065 0.935 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.394 4.632 3.755 11.127 hybrid contribution 0.315 -1.506 -0.902 1.783 sum -9.079 3.126 2.854 10.017 Atomic orbital electron populations 1.22168 0.94088 1.01412 1.02956 1.22381 0.95133 0.97676 0.88611 0.90430 1.22860 0.97973 0.98312 0.97216 1.19714 0.92521 0.94147 0.92078 0.98003 1.21402 1.16202 1.07896 1.11804 0.92669 1.25824 0.95601 1.01068 0.96150 1.70098 1.20694 1.38553 1.26287 0.85571 0.78542 0.79066 0.78587 1.19937 1.20830 1.19159 1.22571 0.94317 0.89360 0.97488 1.63585 1.20248 1.23438 1.17081 1.22635 0.95759 1.05157 0.88993 1.23049 1.01931 0.93930 0.98997 1.23010 1.01266 0.98823 0.98695 0.93523 0.90786 0.91003 0.91864 0.92658 0.92927 0.97094 0.93746 0.89159 0.88998 0.86301 0.87386 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 7.76 71.98 0.56 -3.66 16 2 C 0.07 2.56 4.02 45.26 0.18 2.74 16 3 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 4 C -0.13 -5.30 5.91 31.78 0.19 -5.11 16 5 C 0.03 1.83 2.90 -10.16 -0.03 1.80 16 6 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 7 C -0.53 -30.29 8.52 25.60 0.22 -30.08 16 8 H 0.06 3.05 7.78 -2.91 -0.02 3.03 16 9 C 0.01 0.73 5.35 84.65 0.45 1.18 16 10 N -0.92 -54.66 12.29 21.45 0.26 -54.39 16 11 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.09 4.52 5.44 86.75 0.47 4.99 16 16 N -0.52 -21.28 5.31 -835.25 -4.43 -25.71 16 17 C -0.02 -0.55 3.29 44.92 0.15 -0.40 16 18 C -0.14 -3.71 9.98 30.60 0.31 -3.40 16 19 C -0.18 -5.52 10.26 30.60 0.31 -5.20 16 20 H 0.05 1.38 6.83 -2.39 -0.02 1.36 16 21 H 0.07 1.87 6.75 -2.39 -0.02 1.85 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.05 2.32 7.68 -2.39 -0.02 2.30 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.01 0.56 7.70 -2.38 -0.02 0.54 16 27 H 0.04 2.50 7.57 -2.39 -0.02 2.49 16 28 H 0.09 2.93 6.09 -2.39 -0.01 2.92 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -61.90 255.72 1.74 -60.16 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.07 Total: 10.83 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 2.81 Total: -37.14 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -4.17 Total: -80.10 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.90 1.74 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107221459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.613 kcal (2) G-P(sol) polarization free energy of solvation -61.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds