Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.46348 * 2 1 4 4 C 1.54376 * 110.41241 * 122.41801 * 2 1 3 5 5 C 1.54255 * 105.06404 * 142.63116 * 4 2 1 6 6 H 1.08999 * 110.32233 * 241.10513 * 5 4 2 7 7 C 1.50695 * 110.32625 * 118.89059 * 5 4 2 8 8 H 1.08005 * 120.00293 * 2.91326 * 7 5 4 9 9 C 1.37882 * 120.00212 * 182.90634 * 7 5 4 10 10 N 1.31513 * 119.99856 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00246 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46818 * 60.00563 * 11 9 7 13 13 H 1.48501 * 109.47261 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47235 * 300.00442 * 11 9 7 15 15 C 1.54385 * 105.05978 * 359.97438 * 5 4 2 16 16 N 1.48561 * 104.59192 * 336.14657 * 15 5 4 17 17 C 1.46898 * 111.00071 * 159.04349 * 16 15 5 18 18 C 1.53002 * 117.49965 * 59.87096 * 17 16 15 19 19 C 1.53000 * 60.02940 * 107.50426 * 18 17 16 20 20 H 1.08994 * 109.47418 * 182.41564 * 1 2 3 21 21 H 1.09000 * 109.47133 * 302.41425 * 1 2 3 22 22 H 1.09003 * 109.47095 * 62.40841 * 1 2 3 23 23 H 1.08994 * 110.32515 * 23.72654 * 4 2 1 24 24 H 1.09006 * 110.40768 * 261.56540 * 4 2 1 25 25 H 0.97003 * 120.00520 * 179.97438 * 10 9 7 26 26 H 1.08998 * 110.40966 * 217.37225 * 15 5 4 27 27 H 1.08996 * 110.51385 * 94.97970 * 15 5 4 28 28 H 1.08999 * 115.55953 * 274.18818 * 17 16 15 29 29 H 1.09002 * 117.49918 * 0.02562 * 18 17 16 30 30 H 1.09002 * 117.49754 * 215.00609 * 18 17 16 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 1.2214 5 6 3.3177 -1.5189 0.7053 6 1 3.1860 -2.5962 0.8065 7 6 4.5432 -1.0673 1.4571 8 1 4.4499 -0.3561 2.2645 9 6 5.7836 -1.5622 1.1143 10 7 5.8973 -2.4280 0.1308 11 14 7.3027 -1.0031 2.0466 12 1 7.1601 -1.3557 3.4820 13 1 8.5024 -1.6767 1.4878 14 1 7.4533 0.4680 1.9108 15 6 3.4287 -1.1303 -0.7847 16 7 2.0476 -0.7471 -1.1755 17 6 2.0559 0.1001 -2.3755 18 6 2.6655 -0.4866 -3.6503 19 6 1.1496 -0.3119 -3.5383 20 1 -0.3634 -1.0267 0.0433 21 1 -0.3633 0.5509 0.8675 22 1 -0.3633 0.4760 -0.9108 23 1 1.3235 -1.4880 1.5759 24 1 2.3414 -0.0855 2.0197 25 1 6.7700 -2.7759 -0.1107 26 1 3.7685 -1.9812 -1.3751 27 1 4.1072 -0.2866 -0.9099 28 1 2.1922 1.1667 -2.1972 29 1 3.0600 -1.5014 -3.5986 30 1 3.2032 0.1940 -4.3104 31 1 0.6901 0.4839 -4.1245 32 1 0.5472 -1.2116 -3.4133 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107221461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = 19.565774 kcal Electronic energy + Delta-G solvation = -12698.081359 eV Core-core repulsion = 10658.891878 eV Total energy + Delta-G solvation = -2039.189482 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.53017 -35.58780 -32.81750 -30.15624 -29.37511 -25.09447 -24.09443 -21.93054 -21.03627 -19.28332 -19.10410 -16.53122 -15.57277 -14.61129 -14.48705 -13.85921 -13.41304 -12.74825 -12.56204 -11.75622 -11.56914 -11.41102 -11.15971 -11.11324 -10.95700 -10.82475 -10.50950 -10.25612 -9.83132 -9.70188 -9.35762 -9.12642 -8.87551 -8.39881 -7.57686 -6.01690 -4.04676 3.31483 3.36379 3.38725 4.25722 4.42792 4.63777 5.29959 5.37154 5.41415 5.57597 5.61372 5.87775 5.96216 6.00648 6.09596 6.24430 6.33069 6.39140 6.53634 6.54929 6.57658 6.79101 7.00350 7.08451 7.22276 7.56330 7.71391 7.84981 7.99064 8.08341 8.47665 8.98778 9.59312 11.07955 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.042353 B = 0.011209 C = 0.009514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.945166 B = 2497.485183 C = 2942.420930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.063 3.937 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.046 3.954 6 H 0.033 0.967 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.069 3.931 16 N -0.493 5.493 17 C 0.007 3.993 18 C -0.175 4.175 19 C -0.172 4.172 20 H 0.057 0.943 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.261 0.739 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 4.353 -3.878 9.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.027 3.973 6 H 0.051 0.949 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.204 1.204 15 C -0.058 4.058 16 N -0.217 5.217 17 C -0.103 4.103 18 C -0.213 4.213 19 C -0.210 4.210 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.243 3.771 -4.110 9.142 hybrid contribution 1.503 1.055 0.524 1.909 sum -5.740 4.826 -3.586 8.313 Atomic orbital electron populations 1.21682 0.95345 1.01614 1.00150 1.22565 0.94397 0.95691 0.91897 0.94143 1.22491 0.98595 0.98443 0.95635 1.19376 0.91322 0.95851 0.90746 0.94921 1.21231 0.91412 1.25795 1.17048 0.92622 1.25008 0.98948 0.94875 0.95121 1.69953 1.24084 1.30168 1.28425 0.86692 0.82476 0.78803 0.80235 1.20242 1.21295 1.20373 1.23097 0.84803 0.99058 0.98816 1.65312 1.21915 1.33736 1.00770 1.22541 1.04453 0.95162 0.88129 1.22954 0.95652 1.02784 0.99910 1.22997 0.93199 1.03039 1.01752 0.92390 0.93267 0.93539 0.93282 0.92437 0.92941 0.91024 0.94867 0.90304 0.88340 0.89477 0.89739 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.37 37.16 0.35 -1.73 16 2 C 0.06 1.22 2.88 -66.06 -0.19 1.03 16 3 H 0.04 0.80 7.79 -51.93 -0.40 0.39 16 4 C -0.11 -2.44 6.19 -25.35 -0.16 -2.60 16 5 C 0.05 1.18 2.99 -90.39 -0.27 0.91 16 6 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.52 -14.29 8.41 -34.44 -0.29 -14.58 16 8 H 0.06 1.52 7.36 -52.48 -0.39 1.13 16 9 C 0.06 1.74 5.33 -17.82 -0.09 1.65 16 10 N -0.89 -25.59 12.35 55.43 0.68 -24.91 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.07 1.67 4.61 -2.18 -0.01 1.66 16 16 N -0.49 -10.16 5.22 -214.18 -1.12 -11.27 16 17 C 0.01 0.13 4.99 -67.68 -0.34 -0.21 16 18 C -0.18 -2.86 9.94 -26.73 -0.27 -3.13 16 19 C -0.17 -2.58 10.46 -26.70 -0.28 -2.85 16 20 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 23 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 24 H 0.06 1.22 7.43 -51.93 -0.39 0.84 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.07 1.88 7.88 -51.93 -0.41 1.47 16 27 H 0.03 0.87 7.71 -51.93 -0.40 0.46 16 28 H 0.08 1.38 7.82 -51.93 -0.41 0.98 16 29 H 0.10 1.74 8.06 -51.93 -0.42 1.33 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 260.63 15.07 3.93 3.93 Total: -1.00 -28.11 260.63 -8.38 -36.49 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.30 Total: -0.74 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.55 Total: -19.85 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.43 Total: -36.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.11 -8.38 -36.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107221461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.055 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds