Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.46348 * 2 1 4 4 C 1.54376 * 110.41241 * 122.41801 * 2 1 3 5 5 C 1.54255 * 105.06404 * 142.63116 * 4 2 1 6 6 H 1.08999 * 110.32233 * 241.10513 * 5 4 2 7 7 C 1.50695 * 110.32625 * 118.89059 * 5 4 2 8 8 H 1.08005 * 120.00293 * 2.91326 * 7 5 4 9 9 C 1.37882 * 120.00212 * 182.90634 * 7 5 4 10 10 N 1.31513 * 119.99856 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00246 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46818 * 60.00563 * 11 9 7 13 13 H 1.48501 * 109.47261 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47235 * 300.00442 * 11 9 7 15 15 C 1.54385 * 105.05978 * 359.97438 * 5 4 2 16 16 N 1.48561 * 104.59192 * 336.14657 * 15 5 4 17 17 C 1.46898 * 111.00071 * 159.04349 * 16 15 5 18 18 C 1.53002 * 117.49965 * 59.87096 * 17 16 15 19 19 C 1.53000 * 60.02940 * 107.50426 * 18 17 16 20 20 H 1.08994 * 109.47418 * 182.41564 * 1 2 3 21 21 H 1.09000 * 109.47133 * 302.41425 * 1 2 3 22 22 H 1.09003 * 109.47095 * 62.40841 * 1 2 3 23 23 H 1.08994 * 110.32515 * 23.72654 * 4 2 1 24 24 H 1.09006 * 110.40768 * 261.56540 * 4 2 1 25 25 H 0.97003 * 120.00520 * 179.97438 * 10 9 7 26 26 H 1.08998 * 110.40966 * 217.37225 * 15 5 4 27 27 H 1.08996 * 110.51385 * 94.97970 * 15 5 4 28 28 H 1.08999 * 115.55953 * 274.18818 * 17 16 15 29 29 H 1.09002 * 117.49918 * 0.02562 * 18 17 16 30 30 H 1.09002 * 117.49754 * 215.00609 * 18 17 16 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 1.2214 5 6 3.3177 -1.5189 0.7053 6 1 3.1860 -2.5962 0.8065 7 6 4.5432 -1.0673 1.4571 8 1 4.4499 -0.3561 2.2645 9 6 5.7836 -1.5622 1.1143 10 7 5.8973 -2.4280 0.1308 11 14 7.3027 -1.0031 2.0466 12 1 7.1601 -1.3557 3.4820 13 1 8.5024 -1.6767 1.4878 14 1 7.4533 0.4680 1.9108 15 6 3.4287 -1.1303 -0.7847 16 7 2.0476 -0.7471 -1.1755 17 6 2.0559 0.1001 -2.3755 18 6 2.6655 -0.4866 -3.6503 19 6 1.1496 -0.3119 -3.5383 20 1 -0.3634 -1.0267 0.0433 21 1 -0.3633 0.5509 0.8675 22 1 -0.3633 0.4760 -0.9108 23 1 1.3235 -1.4880 1.5759 24 1 2.3414 -0.0855 2.0197 25 1 6.7700 -2.7759 -0.1107 26 1 3.7685 -1.9812 -1.3751 27 1 4.1072 -0.2866 -0.9099 28 1 2.1922 1.1667 -2.1972 29 1 3.0600 -1.5014 -3.5986 30 1 3.2032 0.1940 -4.3104 31 1 0.6901 0.4839 -4.1245 32 1 0.5472 -1.2116 -3.4133 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107221461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = 2.446753 kcal Electronic energy + Delta-G solvation = -12698.823695 eV Core-core repulsion = 10658.891878 eV Total energy + Delta-G solvation = -2039.931818 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15809 -37.09243 -34.81372 -31.84301 -31.14208 -26.98851 -25.88663 -23.23288 -22.59499 -20.97145 -20.83823 -18.57278 -17.15605 -16.41734 -16.15541 -15.51326 -15.09899 -14.46107 -14.07140 -13.47703 -13.34689 -13.11714 -12.83554 -12.64156 -12.48114 -12.39997 -12.30848 -11.98259 -11.52676 -11.20825 -11.02083 -10.93099 -10.85870 -10.51185 -9.25420 -8.15628 -6.26507 1.39520 1.40981 1.48789 2.40539 2.89477 3.10843 3.20419 3.99549 4.02669 4.08736 4.21343 4.39126 4.49297 4.64290 4.66898 4.79387 4.86125 4.97104 4.99722 5.06904 5.16304 5.19261 5.34643 5.35291 5.50491 5.58831 5.67598 5.86073 6.01235 6.38216 6.41897 6.85887 7.41235 8.93401 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.042353 B = 0.011209 C = 0.009514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.945166 B = 2497.485183 C = 2942.420930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.064 3.936 3 H 0.038 0.962 4 C -0.108 4.108 5 C 0.035 3.965 6 H -0.003 1.003 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.012 3.988 10 N -0.918 5.918 11 Si 0.956 3.044 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.091 3.909 16 N -0.495 5.495 17 C -0.023 4.023 18 C -0.182 4.182 19 C -0.138 4.138 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.261 0.739 26 H 0.041 0.959 27 H 0.006 0.994 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 5.777 -4.104 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.044 4.044 3 H 0.057 0.943 4 C -0.146 4.146 5 C 0.016 3.984 6 H 0.015 0.985 7 C -0.574 4.574 8 H 0.074 0.926 9 C -0.187 4.187 10 N -0.557 5.557 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.196 1.196 15 C -0.036 4.036 16 N -0.220 5.220 17 C -0.132 4.132 18 C -0.219 4.219 19 C -0.175 4.175 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.338 5.203 -4.335 10.742 hybrid contribution 1.817 0.588 0.570 1.993 sum -6.521 5.791 -3.764 9.499 Atomic orbital electron populations 1.21601 0.92020 1.02081 1.02020 1.22634 0.96902 0.94782 0.90102 0.94348 1.22418 0.97006 0.98518 0.96696 1.19370 0.92961 0.94192 0.91908 0.98480 1.21573 0.92572 1.25922 1.17346 0.92574 1.25824 1.02032 0.94900 0.95958 1.70092 1.24716 1.31142 1.29712 0.85646 0.78614 0.78543 0.79092 1.19402 1.20906 1.19633 1.22582 0.86708 0.96741 0.97597 1.65278 1.18887 1.35446 1.02349 1.22702 1.07807 0.95111 0.87609 1.22997 0.97523 1.01940 0.99455 1.23063 0.92021 1.03590 0.98853 0.92640 0.91026 0.92014 0.92096 0.92393 0.92965 0.94051 0.97531 0.89646 0.90602 0.87423 0.86290 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 9.37 71.98 0.67 -2.77 16 2 C 0.06 2.40 2.88 45.05 0.13 2.53 16 3 H 0.04 1.46 7.79 -2.39 -0.02 1.44 16 4 C -0.11 -4.63 6.19 31.49 0.19 -4.44 16 5 C 0.03 1.85 2.99 -10.65 -0.03 1.81 16 6 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 7 C -0.54 -30.33 8.41 25.60 0.22 -30.11 16 8 H 0.06 3.09 7.36 -2.91 -0.02 3.07 16 9 C 0.01 0.69 5.33 84.66 0.45 1.14 16 10 N -0.92 -54.52 12.35 21.45 0.26 -54.26 16 11 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C 0.09 4.60 4.61 86.45 0.40 5.00 16 16 N -0.50 -20.30 5.22 -831.53 -4.34 -24.64 16 17 C -0.02 -0.78 4.99 44.94 0.22 -0.56 16 18 C -0.18 -5.73 9.94 30.60 0.30 -5.42 16 19 C -0.14 -3.71 10.46 30.62 0.32 -3.39 16 20 H 0.05 1.63 8.09 -2.39 -0.02 1.61 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.06 1.60 8.05 -2.39 -0.02 1.59 16 23 H 0.06 2.42 7.82 -2.39 -0.02 2.40 16 24 H 0.06 2.44 7.43 -2.38 -0.02 2.42 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 26 H 0.04 2.29 7.88 -2.39 -0.02 2.27 16 27 H 0.01 0.34 7.71 -2.39 -0.02 0.33 16 28 H 0.09 2.83 7.82 -2.39 -0.02 2.81 16 29 H 0.08 2.73 8.06 -2.39 -0.02 2.71 16 30 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -61.62 260.63 1.89 -59.73 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.06 Total: 9.13 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 2.88 Total: -36.21 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -4.08 Total: -78.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -61.62 1.89 -59.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107221461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.179 kcal (2) G-P(sol) polarization free energy of solvation -61.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds