Wall clock time and date at job start Mon Mar 30 2020 02:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00070 * 2 1 4 4 C 1.50708 * 119.99638 * 180.02562 * 2 1 3 5 5 N 1.46898 * 109.47200 * 94.86792 * 4 2 1 6 6 C 1.46896 * 110.99851 * 184.27051 * 5 4 2 7 7 C 1.52999 * 109.46852 * 185.65207 * 6 5 4 8 8 C 1.50699 * 115.55452 * 305.13986 * 7 6 5 9 9 H 1.08000 * 120.00457 * 274.74822 * 8 7 6 10 10 C 1.37889 * 119.99414 * 94.46843 * 8 7 6 11 11 N 1.31516 * 119.99402 * 180.17693 * 10 8 7 12 12 Si 1.86794 * 120.00258 * 0.18297 * 10 8 7 13 13 H 1.48493 * 109.47377 * 94.31964 * 12 10 8 14 14 H 1.48502 * 109.46926 * 214.32212 * 12 10 8 15 15 H 1.48507 * 109.46946 * 334.32067 * 12 10 8 16 16 C 1.53002 * 117.49783 * 90.81552 * 7 6 5 17 17 C 1.53005 * 117.49860 * 159.47391 * 7 6 5 18 18 H 1.07999 * 119.99557 * 0.02562 * 1 2 3 19 19 H 1.08005 * 120.00137 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47125 * 239.99455 * 3 2 1 21 21 H 1.08995 * 109.47351 * 359.97438 * 3 2 1 22 22 H 1.08996 * 109.47210 * 120.00253 * 3 2 1 23 23 H 1.08993 * 109.46921 * 334.86603 * 4 2 1 24 24 H 1.08995 * 109.46485 * 214.86587 * 4 2 1 25 25 H 1.00899 * 110.99797 * 308.22733 * 5 4 2 26 26 H 1.09000 * 109.47225 * 65.65803 * 6 5 4 27 27 H 1.08992 * 109.47222 * 305.65475 * 6 5 4 28 28 H 0.97003 * 119.99636 * 179.97438 * 11 10 8 29 29 H 1.09004 * 117.50098 * 215.00211 * 16 7 6 30 30 H 1.08998 * 117.49695 * 0.02562 * 16 7 6 31 31 H 1.09001 * 117.49366 * 359.97438 * 17 7 6 32 32 H 1.08997 * 117.50169 * 144.97319 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 7 2.4100 -1.6699 -1.3807 6 6 3.0572 -2.9877 -1.4302 7 6 3.5289 -3.2708 -2.8579 8 6 2.4692 -3.1703 -3.9246 9 1 1.8373 -4.0193 -4.1398 10 6 2.3026 -1.9924 -4.6219 11 7 1.3754 -1.9036 -5.5504 12 14 3.3937 -0.5232 -4.2478 13 1 4.5495 -0.5148 -5.1800 14 1 2.6129 0.7288 -4.4161 15 1 3.8860 -0.6154 -2.8497 16 6 4.9495 -2.8419 -3.2307 17 6 4.6215 -4.3255 -3.0449 18 1 -0.5399 0.9353 -0.0004 19 1 -0.5400 -0.9353 -0.0004 20 1 2.6903 1.3628 -0.8900 21 1 1.3553 2.1336 -0.0005 22 1 2.6902 1.3628 0.8899 23 1 1.4394 -2.0851 0.4355 24 1 2.9753 -1.1985 0.5869 25 1 1.5963 -1.6440 -1.9768 26 1 2.3450 -3.7540 -1.1243 27 1 3.9135 -2.9975 -0.7560 28 1 1.2579 -1.0749 -6.0407 29 1 5.1176 -2.4869 -4.2475 30 1 5.5481 -2.3584 -2.4587 31 1 5.0045 -4.8173 -2.1506 32 1 4.5735 -4.9469 -3.9391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167558749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:34 Heat of formation + Delta-G solvation = 42.172811 kcal Electronic energy + Delta-G solvation = -12596.406456 eV Core-core repulsion = 10558.197289 eV Total energy + Delta-G solvation = -2038.209167 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.55762 -36.08477 -32.78418 -31.97838 -27.15241 -26.61033 -25.19724 -23.02385 -21.49361 -18.95770 -18.08925 -16.19327 -15.36849 -14.78520 -14.28424 -14.04033 -13.73943 -13.45869 -12.73238 -12.45074 -12.19489 -11.84643 -11.47666 -11.25854 -10.96831 -10.68538 -10.49397 -10.21741 -9.86248 -9.36990 -8.99166 -8.86311 -8.51426 -8.36843 -7.37754 -6.00179 -4.06887 2.47418 3.49871 3.60671 3.89874 4.67010 4.82951 5.12258 5.19059 5.30993 5.39075 5.74393 5.81011 5.89709 5.96581 6.00485 6.12769 6.18758 6.23454 6.28000 6.43293 6.55650 6.57917 6.81546 6.84277 7.09381 7.15119 7.20276 7.82451 7.91647 8.22851 8.57506 8.99361 9.63883 11.09692 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030399 B = 0.014582 C = 0.012391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.849293 B = 1919.703520 C = 2259.192082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.089 3.911 5 N -0.672 5.672 6 C 0.102 3.898 7 C 0.009 3.991 8 C -0.496 4.496 9 H 0.072 0.928 10 C 0.081 3.919 11 N -0.903 5.903 12 Si 0.873 3.127 13 H -0.299 1.299 14 H -0.305 1.305 15 H -0.207 1.207 16 C -0.194 4.194 17 C -0.188 4.188 18 H 0.095 0.905 19 H 0.095 0.905 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.356 0.644 26 H 0.022 0.978 27 H 0.046 0.954 28 H 0.263 0.737 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 3.200 10.680 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.114 4.114 3 C -0.171 4.171 4 C -0.040 4.040 5 N -0.305 5.305 6 C -0.027 4.027 7 C 0.008 3.992 8 C -0.533 4.533 9 H 0.090 0.910 10 C -0.122 4.122 11 N -0.540 5.540 12 Si 0.701 3.299 13 H -0.226 1.226 14 H -0.233 1.233 15 H -0.128 1.128 16 C -0.231 4.231 17 C -0.226 4.226 18 H 0.113 0.887 19 H 0.113 0.887 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.177 0.823 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.671 3.652 10.573 11.500 hybrid contribution -0.290 0.220 0.006 0.364 sum 2.380 3.871 10.579 11.514 Atomic orbital electron populations 1.23686 0.95269 1.01600 1.03234 1.21759 0.95138 0.96077 0.98425 1.20816 1.00080 0.93913 1.02317 1.20973 0.97892 0.92673 0.92444 1.60635 1.33606 1.30064 1.06228 1.21476 0.96409 0.88213 0.96645 1.19373 0.88264 0.97972 0.93608 1.20249 1.16555 0.99642 1.16876 0.91024 1.25026 0.94797 0.98704 0.93670 1.69935 1.33282 1.27199 1.23549 0.86990 0.79831 0.80621 0.82465 1.22647 1.23306 1.12837 1.22865 1.02097 0.97138 1.00964 1.22897 1.06835 0.91662 1.01180 0.88689 0.88695 0.90877 0.92631 0.92070 0.95501 0.91407 0.82299 0.96023 0.93505 0.92794 0.89996 0.90865 0.91281 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 13.90 29.01 0.40 -2.51 16 2 C -0.11 -1.77 5.52 -101.06 -0.56 -2.32 16 3 C -0.11 -1.61 10.12 36.00 0.36 -1.24 16 4 C 0.09 1.48 5.86 -4.97 -0.03 1.45 16 5 N -0.67 -13.62 3.85 -115.07 -0.44 -14.06 16 6 C 0.10 2.08 5.62 -3.83 -0.02 2.06 16 7 C 0.01 0.21 1.37 -155.66 -0.21 0.00 16 8 C -0.50 -13.79 8.72 -34.44 -0.30 -14.09 16 9 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 10 C 0.08 2.31 5.13 -17.81 -0.09 2.22 16 11 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 12 Si 0.87 22.13 23.19 -169.99 -3.94 18.19 16 13 H -0.30 -7.72 7.08 56.52 0.40 -7.32 16 14 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 15 H -0.21 -4.91 5.17 56.52 0.29 -4.62 16 16 C -0.19 -4.25 7.06 -26.69 -0.19 -4.44 16 17 C -0.19 -3.90 9.96 -26.69 -0.27 -4.17 16 18 H 0.09 1.23 7.83 -52.49 -0.41 0.82 16 19 H 0.09 1.36 7.99 -52.48 -0.42 0.94 16 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 21 H 0.05 0.69 7.78 -51.93 -0.40 0.29 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.03 0.43 7.98 -51.93 -0.41 0.01 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.36 8.02 7.23 -39.29 -0.28 7.73 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.87 8.07 -51.93 -0.42 0.46 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.08 1.93 6.32 -51.93 -0.33 1.60 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 260.19 15.07 3.92 3.92 Total: -1.00 -29.62 260.19 -5.90 -35.52 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.31 Total: 6.40 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -0.90 Total: -23.05 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.33 Total: -40.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -3.94 Total: 18.19 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.62 -5.90 -35.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167558749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.689 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds