Wall clock time and date at job start Mon Mar 30 2020 02:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00070 * 2 1 4 4 C 1.50708 * 119.99638 * 180.02562 * 2 1 3 5 5 N 1.46898 * 109.47200 * 94.86792 * 4 2 1 6 6 C 1.46896 * 110.99851 * 184.27051 * 5 4 2 7 7 C 1.52999 * 109.46852 * 185.65207 * 6 5 4 8 8 C 1.50699 * 115.55452 * 305.13986 * 7 6 5 9 9 H 1.08000 * 120.00457 * 274.74822 * 8 7 6 10 10 C 1.37889 * 119.99414 * 94.46843 * 8 7 6 11 11 N 1.31516 * 119.99402 * 180.17693 * 10 8 7 12 12 Si 1.86794 * 120.00258 * 0.18297 * 10 8 7 13 13 H 1.48493 * 109.47377 * 94.31964 * 12 10 8 14 14 H 1.48502 * 109.46926 * 214.32212 * 12 10 8 15 15 H 1.48507 * 109.46946 * 334.32067 * 12 10 8 16 16 C 1.53002 * 117.49783 * 90.81552 * 7 6 5 17 17 C 1.53005 * 117.49860 * 159.47391 * 7 6 5 18 18 H 1.07999 * 119.99557 * 0.02562 * 1 2 3 19 19 H 1.08005 * 120.00137 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47125 * 239.99455 * 3 2 1 21 21 H 1.08995 * 109.47351 * 359.97438 * 3 2 1 22 22 H 1.08996 * 109.47210 * 120.00253 * 3 2 1 23 23 H 1.08993 * 109.46921 * 334.86603 * 4 2 1 24 24 H 1.08995 * 109.46485 * 214.86587 * 4 2 1 25 25 H 1.00899 * 110.99797 * 308.22733 * 5 4 2 26 26 H 1.09000 * 109.47225 * 65.65803 * 6 5 4 27 27 H 1.08992 * 109.47222 * 305.65475 * 6 5 4 28 28 H 0.97003 * 119.99636 * 179.97438 * 11 10 8 29 29 H 1.09004 * 117.50098 * 215.00211 * 16 7 6 30 30 H 1.08998 * 117.49695 * 0.02562 * 16 7 6 31 31 H 1.09001 * 117.49366 * 359.97438 * 17 7 6 32 32 H 1.08997 * 117.50169 * 144.97319 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 7 2.4100 -1.6699 -1.3807 6 6 3.0572 -2.9877 -1.4302 7 6 3.5289 -3.2708 -2.8579 8 6 2.4692 -3.1703 -3.9246 9 1 1.8373 -4.0193 -4.1398 10 6 2.3026 -1.9924 -4.6219 11 7 1.3754 -1.9036 -5.5504 12 14 3.3937 -0.5232 -4.2478 13 1 4.5495 -0.5148 -5.1800 14 1 2.6129 0.7288 -4.4161 15 1 3.8860 -0.6154 -2.8497 16 6 4.9495 -2.8419 -3.2307 17 6 4.6215 -4.3255 -3.0449 18 1 -0.5399 0.9353 -0.0004 19 1 -0.5400 -0.9353 -0.0004 20 1 2.6903 1.3628 -0.8900 21 1 1.3553 2.1336 -0.0005 22 1 2.6902 1.3628 0.8899 23 1 1.4394 -2.0851 0.4355 24 1 2.9753 -1.1985 0.5869 25 1 1.5963 -1.6440 -1.9768 26 1 2.3450 -3.7540 -1.1243 27 1 3.9135 -2.9975 -0.7560 28 1 1.2579 -1.0749 -6.0407 29 1 5.1176 -2.4869 -4.2475 30 1 5.5481 -2.3584 -2.4587 31 1 5.0045 -4.8173 -2.1506 32 1 4.5735 -4.9469 -3.9391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167558749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:34 Heat of formation + Delta-G solvation = 23.099659 kcal Electronic energy + Delta-G solvation = -12597.233530 eV Core-core repulsion = 10558.197289 eV Total energy + Delta-G solvation = -2039.036241 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.19739 -37.46519 -34.22975 -34.12900 -28.48806 -28.00237 -27.13807 -24.50582 -23.18353 -20.78471 -19.39887 -18.19082 -16.75213 -16.71873 -15.79315 -15.53645 -15.15448 -14.87340 -14.60070 -14.05618 -13.70989 -13.40121 -13.01740 -12.66576 -12.47699 -12.40118 -11.99934 -11.95228 -11.62825 -11.32993 -10.88772 -10.56991 -10.28935 -9.98247 -8.94880 -8.23615 -6.32529 1.29916 1.46455 1.54104 1.86883 2.55020 3.13551 3.21018 3.73544 3.98613 4.05432 4.21290 4.42840 4.54997 4.64630 4.72438 4.79954 4.81559 4.89313 4.92097 4.92603 5.03790 5.13409 5.16681 5.39362 5.52568 5.70132 5.79807 5.96876 6.31497 6.39666 6.55672 6.78836 7.41336 8.90088 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030399 B = 0.014582 C = 0.012391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.849293 B = 1919.703520 C = 2259.192082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.113 4.113 4 C 0.090 3.910 5 N -0.684 5.684 6 C 0.110 3.890 7 C -0.019 4.019 8 C -0.490 4.490 9 H 0.025 0.975 10 C 0.032 3.968 11 N -0.953 5.953 12 Si 0.933 3.067 13 H -0.305 1.305 14 H -0.317 1.317 15 H -0.176 1.176 16 C -0.190 4.190 17 C -0.171 4.171 18 H 0.111 0.889 19 H 0.092 0.908 20 H 0.054 0.946 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.032 0.968 24 H 0.084 0.916 25 H 0.338 0.662 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 3.852 13.006 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.132 4.132 3 C -0.169 4.169 4 C -0.038 4.038 5 N -0.316 5.316 6 C -0.020 4.020 7 C -0.020 4.020 8 C -0.527 4.527 9 H 0.044 0.956 10 C -0.165 4.165 11 N -0.593 5.593 12 Si 0.761 3.239 13 H -0.234 1.234 14 H -0.246 1.246 15 H -0.097 1.097 16 C -0.227 4.227 17 C -0.208 4.208 18 H 0.129 0.871 19 H 0.110 0.890 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.156 0.844 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.276 4.281 12.933 14.279 hybrid contribution -0.856 -0.093 -0.726 1.126 sum 3.420 4.188 12.207 13.351 Atomic orbital electron populations 1.23877 0.95302 1.02318 1.02065 1.21906 0.95534 0.96362 0.99400 1.20821 1.00270 0.93545 1.02287 1.21045 0.98986 0.93308 0.90479 1.60633 1.32964 1.29857 1.08134 1.21380 0.97324 0.88378 0.94872 1.19378 0.87753 1.01003 0.93869 1.20427 1.16778 0.97780 1.17764 0.95629 1.25764 0.95896 1.01386 0.93483 1.70072 1.35749 1.27928 1.25552 0.86100 0.77600 0.76731 0.83510 1.23363 1.24575 1.09675 1.22879 1.00864 0.98225 1.00698 1.22947 1.04451 0.91151 1.02281 0.87099 0.88990 0.92721 0.91323 0.90162 0.94981 0.89743 0.84366 0.96348 0.90560 0.92983 0.92038 0.87986 0.87443 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.38 13.90 67.78 0.94 -4.43 16 2 C -0.13 -3.77 5.52 -16.48 -0.09 -3.86 16 3 C -0.11 -2.83 10.12 71.24 0.72 -2.11 16 4 C 0.09 2.73 5.86 85.56 0.50 3.23 16 5 N -0.68 -26.19 3.85 -517.96 -1.99 -28.19 16 6 C 0.11 4.17 5.62 86.30 0.48 4.65 16 7 C -0.02 -0.85 1.37 -52.93 -0.07 -0.92 16 8 C -0.49 -27.70 8.72 25.60 0.22 -27.48 16 9 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 10 C 0.03 1.88 5.13 84.66 0.43 2.31 16 11 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 12 Si 0.93 46.04 23.19 68.60 1.59 47.63 16 13 H -0.31 -15.26 7.08 99.48 0.70 -14.56 16 14 H -0.32 -16.13 7.11 99.48 0.71 -15.43 16 15 H -0.18 -7.76 5.17 99.48 0.51 -7.25 16 16 C -0.19 -7.74 7.06 30.62 0.22 -7.52 16 17 C -0.17 -6.59 9.96 30.62 0.30 -6.29 16 18 H 0.11 2.62 7.83 -2.91 -0.02 2.59 16 19 H 0.09 2.52 7.99 -2.91 -0.02 2.49 16 20 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 21 H 0.07 1.51 7.78 -2.39 -0.02 1.49 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.03 0.94 7.98 -2.39 -0.02 0.92 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.34 14.98 7.23 -89.69 -0.65 14.33 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 28 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 29 H 0.06 2.77 6.32 -2.39 -0.02 2.75 16 30 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -64.47 260.19 3.79 -60.68 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.23 Total: 22.45 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 3.66 Total: -42.42 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -1.69 Total: -88.35 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.59 Total: 47.63 kcal Total: -64.47 3.79 -60.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167558749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.783 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds