Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31000 * 120.00511 * 2 1 4 4 C 1.50699 * 119.99493 * 0.02562 * 3 2 1 5 5 N 1.46906 * 109.46842 * 125.49805 * 4 3 2 6 6 C 1.46904 * 110.99607 * 286.03127 * 5 4 3 7 7 C 1.50702 * 109.46884 * 170.00391 * 6 5 4 8 8 H 1.07998 * 119.99678 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99798 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99699 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99971 * 359.97438 * 9 7 6 12 12 H 1.48491 * 109.47097 * 90.00578 * 11 9 7 13 13 H 1.48501 * 109.46882 * 210.00259 * 11 9 7 14 14 H 1.48496 * 109.47115 * 330.00224 * 11 9 7 15 15 C 1.46904 * 110.99743 * 162.07736 * 5 4 3 16 16 C 1.52997 * 117.50118 * 10.19291 * 15 5 4 17 17 C 1.52989 * 117.50298 * 301.56961 * 15 5 4 18 18 H 1.09002 * 109.47296 * 179.97438 * 1 2 3 19 19 H 1.09006 * 109.46605 * 300.00062 * 1 2 3 20 20 H 1.09001 * 109.47344 * 59.99265 * 1 2 3 21 21 H 1.08004 * 119.99830 * 180.02562 * 2 1 3 22 22 H 1.08004 * 120.00141 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47527 * 5.49324 * 4 3 2 24 24 H 1.09006 * 109.47002 * 245.49327 * 4 3 2 25 25 H 1.08993 * 109.47173 * 49.99768 * 6 5 4 26 26 H 1.08998 * 109.47099 * 290.00011 * 6 5 4 27 27 H 0.97002 * 120.00043 * 179.97438 * 10 9 7 28 28 H 1.09000 * 115.54673 * 155.89482 * 15 5 4 29 29 H 1.09008 * 117.50011 * 0.02562 * 16 15 5 30 30 H 1.08996 * 117.50034 * 145.01405 * 16 15 5 31 31 H 1.08998 * 117.49919 * 214.98228 * 17 15 5 32 32 H 1.09008 * 117.49506 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1344 0.0000 4 6 1.4086 2.4395 0.0006 5 7 1.8607 3.2654 1.1282 6 6 1.3357 2.7520 2.4005 7 6 2.0089 3.4639 3.5456 8 1 2.7527 4.2215 3.3479 9 6 1.6761 3.1470 4.8455 10 7 2.2632 3.7687 5.8447 11 14 0.3901 1.8360 5.1873 12 1 1.0512 0.5108 5.2963 13 1 -0.3077 2.1472 6.4607 14 1 -0.5954 1.8078 4.0769 15 6 1.4862 4.6725 0.9336 16 6 0.5268 4.9961 -0.2134 17 6 2.0051 5.3744 -0.3228 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 2.0470 -0.9354 -0.0004 22 1 3.2421 1.1344 -0.0004 23 1 0.3410 2.2428 0.0993 24 1 1.5957 2.9675 -0.9345 25 1 1.5342 1.6826 2.4704 26 1 0.2606 2.9257 2.4465 27 1 2.0288 3.5461 6.7593 28 1 1.4018 5.2667 1.8435 29 1 0.1730 4.1648 -0.8234 30 1 -0.1892 5.8032 -0.0582 31 1 2.2618 6.4305 -0.2397 32 1 2.6248 4.7922 -1.0049 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218059911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 49.066658 kcal Electronic energy + Delta-G solvation = -12498.390294 eV Core-core repulsion = 10460.480067 eV Total energy + Delta-G solvation = -2037.910227 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49719 -35.30175 -33.31771 -31.81612 -28.48459 -26.62924 -24.37012 -22.02534 -21.80087 -19.49160 -17.88926 -16.78066 -15.93424 -15.35130 -14.47550 -14.16830 -13.50514 -13.03901 -12.99627 -12.36284 -12.18983 -11.91260 -11.51838 -11.18070 -11.08492 -10.86952 -10.66243 -10.40659 -10.04606 -9.83760 -9.69323 -9.25914 -8.63957 -8.54058 -7.24019 -6.04125 -4.01074 2.55998 3.29310 3.36431 3.38627 4.35972 4.43383 4.75139 5.25630 5.28520 5.40639 5.41691 5.50774 5.60849 5.67897 5.80377 5.85468 5.94546 6.00927 6.16496 6.29524 6.40634 6.50866 6.66428 6.88311 6.95228 7.00071 7.14469 7.61665 7.93876 8.04539 8.66768 9.05375 9.57875 11.09017 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.025557 B = 0.014258 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.314927 B = 1963.283787 C = 2714.138479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.180 4.180 3 C -0.130 4.130 4 C 0.068 3.932 5 N -0.494 5.494 6 C 0.165 3.835 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.053 3.947 16 C -0.235 4.235 17 C -0.184 4.184 18 H 0.054 0.946 19 H 0.064 0.936 20 H 0.059 0.941 21 H 0.106 0.894 22 H 0.112 0.888 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.028 0.972 26 H -0.010 1.010 27 H 0.263 0.737 28 H 0.130 0.870 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -3.283 -11.707 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.199 4.199 3 C -0.149 4.149 4 C -0.059 4.059 5 N -0.215 5.215 6 C 0.039 3.961 7 C -0.548 4.548 8 H 0.100 0.900 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.057 4.057 16 C -0.274 4.274 17 C -0.222 4.222 18 H 0.073 0.927 19 H 0.083 0.917 20 H 0.078 0.922 21 H 0.124 0.876 22 H 0.130 0.870 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.007 0.993 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.474 -3.318 -11.458 12.424 hybrid contribution -1.424 -0.685 0.291 1.607 sum -4.898 -4.003 -11.166 12.834 Atomic orbital electron populations 1.20833 0.93911 1.01482 1.01761 1.22693 0.95923 0.97750 1.03536 1.22815 1.00021 0.93700 0.98318 1.21383 0.96520 0.92617 0.95426 1.61745 1.58144 0.99235 1.02369 1.20182 0.93184 0.95940 0.86762 1.21060 1.23094 1.22022 0.88575 0.90043 1.24880 0.96075 0.96114 0.96160 1.69894 1.42829 1.42258 0.98956 0.86904 0.82544 0.82741 0.77880 1.20108 1.21210 1.19245 1.22701 0.98592 0.91450 0.92921 1.23551 0.93334 1.03872 1.06681 1.23004 0.95778 1.00684 1.02744 0.92691 0.91711 0.92177 0.87617 0.87010 0.94220 0.90797 0.95381 0.99264 0.92691 0.85222 0.89162 0.89522 0.89111 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.65 36.00 0.31 -1.39 16 2 C -0.18 -2.70 10.26 -36.03 -0.37 -3.07 16 3 C -0.13 -2.17 8.92 -36.03 -0.32 -2.49 16 4 C 0.07 1.19 3.86 -4.97 -0.02 1.17 16 5 N -0.49 -10.51 4.64 -229.52 -1.07 -11.58 16 6 C 0.17 4.06 3.62 -4.97 -0.02 4.04 16 7 C -0.51 -14.56 8.84 -34.44 -0.30 -14.87 16 8 H 0.08 2.53 7.79 -52.49 -0.41 2.13 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 11 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 15 C 0.05 1.04 5.74 -67.72 -0.39 0.65 16 16 C -0.24 -3.74 9.56 -26.74 -0.26 -3.99 16 17 C -0.18 -2.94 9.92 -26.74 -0.27 -3.20 16 18 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 19 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 20 H 0.06 0.75 7.86 -51.93 -0.41 0.35 16 21 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 22 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 23 H 0.04 0.69 5.48 -51.93 -0.28 0.41 16 24 H 0.07 1.18 5.66 -51.93 -0.29 0.89 16 25 H 0.03 0.70 6.78 -51.93 -0.35 0.35 16 26 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.13 2.83 7.18 -51.93 -0.37 2.45 16 29 H 0.09 1.36 6.01 -51.92 -0.31 1.05 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.37 7.48 -51.92 -0.39 0.98 16 LS Contribution 259.59 15.07 3.91 3.91 Total: -1.00 -29.97 259.59 -7.65 -37.62 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.87 Total: 1.17 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.73 Total: -21.23 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.29 Total: -38.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.97 -7.65 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218059911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.684 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds