Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31000 * 120.00511 * 2 1 4 4 C 1.50699 * 119.99493 * 0.02562 * 3 2 1 5 5 N 1.46906 * 109.46842 * 125.49805 * 4 3 2 6 6 C 1.46904 * 110.99607 * 286.03127 * 5 4 3 7 7 C 1.50702 * 109.46884 * 170.00391 * 6 5 4 8 8 H 1.07998 * 119.99678 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99798 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99699 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99971 * 359.97438 * 9 7 6 12 12 H 1.48491 * 109.47097 * 90.00578 * 11 9 7 13 13 H 1.48501 * 109.46882 * 210.00259 * 11 9 7 14 14 H 1.48496 * 109.47115 * 330.00224 * 11 9 7 15 15 C 1.46904 * 110.99743 * 162.07736 * 5 4 3 16 16 C 1.52997 * 117.50118 * 10.19291 * 15 5 4 17 17 C 1.52989 * 117.50298 * 301.56961 * 15 5 4 18 18 H 1.09002 * 109.47296 * 179.97438 * 1 2 3 19 19 H 1.09006 * 109.46605 * 300.00062 * 1 2 3 20 20 H 1.09001 * 109.47344 * 59.99265 * 1 2 3 21 21 H 1.08004 * 119.99830 * 180.02562 * 2 1 3 22 22 H 1.08004 * 120.00141 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47527 * 5.49324 * 4 3 2 24 24 H 1.09006 * 109.47002 * 245.49327 * 4 3 2 25 25 H 1.08993 * 109.47173 * 49.99768 * 6 5 4 26 26 H 1.08998 * 109.47099 * 290.00011 * 6 5 4 27 27 H 0.97002 * 120.00043 * 179.97438 * 10 9 7 28 28 H 1.09000 * 115.54673 * 155.89482 * 15 5 4 29 29 H 1.09008 * 117.50011 * 0.02562 * 16 15 5 30 30 H 1.08996 * 117.50034 * 145.01405 * 16 15 5 31 31 H 1.08998 * 117.49919 * 214.98228 * 17 15 5 32 32 H 1.09008 * 117.49506 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1344 0.0000 4 6 1.4086 2.4395 0.0006 5 7 1.8607 3.2654 1.1282 6 6 1.3357 2.7520 2.4005 7 6 2.0089 3.4639 3.5456 8 1 2.7527 4.2215 3.3479 9 6 1.6761 3.1470 4.8455 10 7 2.2632 3.7687 5.8447 11 14 0.3901 1.8360 5.1873 12 1 1.0512 0.5108 5.2963 13 1 -0.3077 2.1472 6.4607 14 1 -0.5954 1.8078 4.0769 15 6 1.4862 4.6725 0.9336 16 6 0.5268 4.9961 -0.2134 17 6 2.0051 5.3744 -0.3228 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 2.0470 -0.9354 -0.0004 22 1 3.2421 1.1344 -0.0004 23 1 0.3410 2.2428 0.0993 24 1 1.5957 2.9675 -0.9345 25 1 1.5342 1.6826 2.4704 26 1 0.2606 2.9257 2.4465 27 1 2.0288 3.5461 6.7593 28 1 1.4018 5.2667 1.8435 29 1 0.1730 4.1648 -0.8234 30 1 -0.1892 5.8032 -0.0582 31 1 2.2618 6.4305 -0.2397 32 1 2.6248 4.7922 -1.0049 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218059911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 29.823590 kcal Electronic energy + Delta-G solvation = -12499.224736 eV Core-core repulsion = 10460.480067 eV Total energy + Delta-G solvation = -2038.744669 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97217 -36.55634 -35.25049 -33.64279 -30.15233 -28.10882 -25.81218 -23.87200 -23.16662 -21.01537 -19.21407 -18.91584 -17.43413 -16.73116 -16.19178 -15.82242 -14.99726 -14.80870 -14.21939 -14.15305 -13.87009 -13.33729 -12.91398 -12.60157 -12.54534 -12.37739 -12.31269 -12.00612 -11.77949 -11.47460 -11.35907 -11.12864 -10.78134 -9.86155 -8.81421 -8.29197 -6.31907 1.32309 1.33188 1.33874 1.44490 2.32959 2.95732 3.03523 3.30488 3.99125 4.06048 4.14538 4.24565 4.31578 4.43260 4.55378 4.61736 4.76406 4.79372 4.83777 5.00862 5.05946 5.09985 5.15913 5.22713 5.27802 5.53693 5.77602 5.87627 6.08809 6.39587 6.66584 6.74705 7.31478 8.87566 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.025557 B = 0.014258 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.314927 B = 1963.283787 C = 2714.138479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.165 4.165 3 C -0.160 4.160 4 C 0.072 3.928 5 N -0.511 5.511 6 C 0.182 3.818 7 C -0.515 4.515 8 H 0.037 0.963 9 C 0.009 3.991 10 N -0.947 5.947 11 Si 0.943 3.057 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.252 1.252 15 C 0.008 3.992 16 C -0.208 4.208 17 C -0.164 4.164 18 H 0.076 0.924 19 H 0.045 0.955 20 H 0.074 0.926 21 H 0.124 0.876 22 H 0.106 0.894 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.027 0.973 26 H -0.015 1.015 27 H 0.267 0.733 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 -4.726 -13.508 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.184 4.184 3 C -0.178 4.178 4 C -0.054 4.054 5 N -0.232 5.232 6 C 0.055 3.945 7 C -0.553 4.553 8 H 0.055 0.945 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.766 3.234 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.176 1.176 15 C -0.101 4.101 16 C -0.247 4.247 17 C -0.201 4.201 18 H 0.095 0.905 19 H 0.064 0.936 20 H 0.093 0.907 21 H 0.142 0.858 22 H 0.124 0.876 23 H 0.062 0.938 24 H 0.110 0.890 25 H 0.045 0.955 26 H 0.002 0.998 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.008 -4.752 -13.290 14.976 hybrid contribution -0.883 -0.171 0.808 1.209 sum -5.891 -4.923 -12.482 14.654 Atomic orbital electron populations 1.20891 0.92920 1.02945 1.01480 1.23013 0.96823 0.97889 1.00662 1.22806 0.99939 0.93978 1.01123 1.21425 0.96759 0.92714 0.94542 1.61664 1.58854 1.00481 1.02219 1.19828 0.92198 0.95117 0.87341 1.21276 1.22283 1.21271 0.90519 0.94474 1.25809 0.98513 0.98662 0.95794 1.70048 1.44881 1.44316 0.99567 0.85777 0.79786 0.79597 0.78227 1.18992 1.20535 1.17575 1.22553 1.03581 0.90689 0.93311 1.23593 0.93433 1.04315 1.03376 1.23083 0.96211 1.01167 0.99673 0.90466 0.93620 0.90699 0.85824 0.87591 0.93799 0.89046 0.95540 0.99757 0.92428 0.88966 0.87696 0.88114 0.87697 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.65 71.23 0.62 -2.45 16 2 C -0.16 -4.50 10.26 25.65 0.26 -4.24 16 3 C -0.16 -5.07 8.92 25.65 0.23 -4.84 16 4 C 0.07 2.41 3.86 85.56 0.33 2.74 16 5 N -0.51 -21.73 4.64 -880.06 -4.09 -25.81 16 6 C 0.18 9.00 3.62 85.56 0.31 9.31 16 7 C -0.52 -30.56 8.84 25.60 0.23 -30.33 16 8 H 0.04 2.46 7.79 -2.91 -0.02 2.44 16 9 C 0.01 0.56 5.47 84.65 0.46 1.03 16 10 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 11 Si 0.94 44.85 27.47 68.60 1.88 46.73 16 12 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 15 C 0.01 0.33 5.74 44.91 0.26 0.58 16 16 C -0.21 -6.12 9.56 30.59 0.29 -5.83 16 17 C -0.16 -4.92 9.92 30.59 0.30 -4.62 16 18 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 19 H 0.04 1.31 7.65 -2.38 -0.02 1.30 16 20 H 0.07 1.61 7.86 -2.39 -0.02 1.59 16 21 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 22 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 23 H 0.04 1.43 5.48 -2.39 -0.01 1.41 16 24 H 0.09 2.67 5.66 -2.38 -0.01 2.66 16 25 H 0.03 1.31 6.78 -2.39 -0.02 1.30 16 26 H -0.02 -0.76 7.18 -2.39 -0.02 -0.77 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.09 4.25 7.18 -2.39 -0.02 4.24 16 29 H 0.10 2.80 6.01 -2.38 -0.01 2.79 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.10 2.81 7.48 -2.38 -0.02 2.79 16 Total: -1.00 -66.21 259.59 2.41 -63.80 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.02 Total: 13.74 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.29 Total: -38.66 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -3.79 Total: -85.61 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -66.21 2.41 -63.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218059911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.626 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds