Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50708 * 119.99984 * 2 1 4 4 H 1.09004 * 109.46898 * 4.99541 * 3 2 1 5 5 C 1.52998 * 109.46974 * 124.99480 * 3 2 1 6 6 N 1.46899 * 109.47110 * 244.99687 * 3 2 1 7 7 C 1.46897 * 110.99870 * 155.00036 * 6 3 2 8 8 C 1.53001 * 109.47067 * 174.15597 * 7 6 3 9 9 C 1.50703 * 115.56114 * 39.74579 * 8 7 6 10 10 H 1.07998 * 119.99901 * 262.31321 * 9 8 7 11 11 C 1.37877 * 119.99715 * 82.31261 * 9 8 7 12 12 N 1.31517 * 120.00249 * 350.93465 * 11 9 8 13 13 Si 1.86802 * 119.99783 * 170.93703 * 11 9 8 14 14 H 1.48496 * 109.46928 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46908 * 119.99750 * 13 11 9 16 16 H 1.48494 * 109.47427 * 240.00068 * 13 11 9 17 17 C 1.53001 * 117.49852 * 254.05760 * 8 7 6 18 18 C 1.52995 * 117.49903 * 185.43409 * 8 7 6 19 19 H 1.08004 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.99874 * 179.97438 * 1 2 3 21 21 H 1.07995 * 120.00418 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47604 * 300.00232 * 5 3 2 23 23 H 1.09004 * 109.47258 * 60.00282 * 5 3 2 24 24 H 1.08997 * 109.47196 * 180.02562 * 5 3 2 25 25 H 1.00903 * 110.99698 * 31.04373 * 6 3 2 26 26 H 1.08998 * 109.47264 * 54.15699 * 7 6 3 27 27 H 1.09005 * 109.47135 * 294.15573 * 7 6 3 28 28 H 0.96999 * 120.00122 * 185.01825 * 12 11 9 29 29 H 1.09004 * 117.49438 * 359.97438 * 17 8 7 30 30 H 1.08998 * 117.49695 * 145.01843 * 17 8 7 31 31 H 1.09003 * 117.50240 * 214.97918 * 18 8 7 32 32 H 1.09004 * 117.50150 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1317 0.0895 5 6 3.0349 1.3332 1.1817 6 7 2.8153 1.4365 -1.2552 7 6 3.0640 2.8486 -1.5745 8 6 3.9699 2.9416 -2.8040 9 6 3.6860 1.9446 -3.8978 10 1 4.2691 1.0382 -3.9670 11 6 2.6816 2.1895 -4.8100 12 7 1.8569 3.1972 -4.6254 13 14 2.4922 1.0901 -6.3083 14 1 3.5373 0.0354 -6.2836 15 1 1.1494 0.4561 -6.2905 16 1 2.6390 1.9042 -7.5415 17 6 5.4281 3.3463 -2.5781 18 6 4.4516 4.3320 -3.2231 19 1 -0.5401 0.9353 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8500 -0.9352 0.0004 22 1 2.4771 1.2357 2.1131 23 1 3.7399 0.5066 1.0922 24 1 3.5796 2.2773 1.1820 25 1 2.3370 0.9732 -2.0133 26 1 3.5504 3.3325 -0.7274 27 1 2.1169 3.3464 -1.7825 28 1 1.1067 3.3265 -5.2266 29 1 5.7418 3.5468 -1.5536 30 1 6.1819 2.8915 -3.2207 31 1 4.5631 4.5256 -4.2899 32 1 4.1227 5.1806 -2.6232 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229211101.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 20.787269 kcal Electronic energy + Delta-G solvation = -12457.499558 eV Core-core repulsion = 10418.363045 eV Total energy + Delta-G solvation = -2039.136514 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04252 -37.37664 -33.96978 -33.31352 -30.33159 -27.54854 -26.26336 -22.97574 -22.74390 -21.13843 -20.37858 -17.87290 -16.96273 -16.57293 -15.93472 -15.27749 -15.04447 -14.88060 -14.38065 -13.49796 -13.29734 -12.99435 -12.90102 -12.85146 -12.67720 -12.41380 -12.24783 -11.94452 -11.55051 -11.28688 -10.70692 -10.46472 -10.33539 -9.90537 -8.99815 -8.06138 -6.14288 1.37540 1.40324 1.44878 1.55028 2.45204 3.20983 3.44329 3.71665 3.95603 4.22587 4.38447 4.55262 4.57002 4.63809 4.79803 4.84574 4.93319 5.00557 5.06709 5.10307 5.19679 5.27637 5.41148 5.62254 5.64881 5.69849 5.81998 5.88129 6.42602 6.60145 6.76219 6.93166 7.51683 9.01520 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.013102 C = 0.009964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.955556 B = 2136.646039 C = 2809.572644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C 0.099 3.901 4 H 0.025 0.975 5 C -0.126 4.126 6 N -0.668 5.668 7 C 0.122 3.878 8 C 0.025 3.975 9 C -0.488 4.488 10 H 0.051 0.949 11 C 0.027 3.973 12 N -0.910 5.910 13 Si 0.944 3.056 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.287 1.287 17 C -0.185 4.185 18 C -0.174 4.174 19 H 0.089 0.911 20 H 0.119 0.881 21 H 0.120 0.880 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.341 0.659 26 H 0.050 0.950 27 H -0.001 1.001 28 H 0.257 0.743 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -3.868 8.075 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.010 4.010 4 H 0.043 0.957 5 C -0.184 4.184 6 N -0.300 5.300 7 C -0.008 4.008 8 C 0.024 3.976 9 C -0.526 4.526 10 H 0.069 0.931 11 C -0.173 4.173 12 N -0.548 5.548 13 Si 0.771 3.229 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.213 1.213 17 C -0.222 4.222 18 C -0.212 4.212 19 H 0.107 0.893 20 H 0.137 0.863 21 H 0.138 0.862 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.160 0.840 26 H 0.069 0.931 27 H 0.017 0.983 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.386 -3.825 8.264 9.114 hybrid contribution -1.159 0.127 -1.391 1.815 sum -1.545 -3.697 6.872 7.955 Atomic orbital electron populations 1.24023 0.95727 1.02460 1.00111 1.23060 0.96051 0.98210 1.00235 1.20798 0.93853 0.94304 0.92080 0.95727 1.21685 0.98809 1.01798 0.96071 1.60562 1.50658 1.13974 1.04764 1.21177 0.96325 0.88248 0.95045 1.18978 0.90841 0.93437 0.94296 1.20578 1.17420 1.04584 1.10059 0.93097 1.25593 0.95800 0.96203 0.99663 1.70108 1.14901 1.31075 1.38728 0.85720 0.77885 0.79111 0.80219 1.19273 1.20753 1.21301 1.22971 0.94422 1.04953 0.99833 1.22497 1.06171 0.94297 0.98267 0.89287 0.86312 0.86180 0.91202 0.92107 0.93549 0.84018 0.93150 0.98323 0.93368 0.89447 0.90733 0.92455 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.89 14.32 67.79 0.97 -3.92 16 2 C -0.16 -4.63 8.75 25.65 0.22 -4.40 16 3 C 0.10 3.36 2.97 44.17 0.13 3.49 16 4 H 0.02 0.89 7.51 -2.39 -0.02 0.87 16 5 C -0.13 -3.62 9.39 71.98 0.68 -2.95 16 6 N -0.67 -27.91 6.05 -495.44 -3.00 -30.91 16 7 C 0.12 5.56 5.58 86.30 0.48 6.04 16 8 C 0.03 1.24 1.70 -52.93 -0.09 1.15 16 9 C -0.49 -26.30 7.47 25.60 0.19 -26.10 16 10 H 0.05 2.80 7.83 -2.91 -0.02 2.77 16 11 C 0.03 1.47 5.39 84.65 0.46 1.93 16 12 N -0.91 -51.56 13.13 21.45 0.28 -51.28 16 13 Si 0.94 43.26 29.55 68.60 2.03 45.29 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 C -0.18 -8.08 9.88 30.60 0.30 -7.78 16 18 C -0.17 -8.31 9.70 30.59 0.30 -8.01 16 19 H 0.09 2.41 7.84 -2.91 -0.02 2.39 16 20 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 21 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.37 7.38 -2.39 -0.02 1.36 16 25 H 0.34 15.70 7.36 -89.69 -0.66 15.04 16 26 H 0.05 2.12 7.12 -2.39 -0.02 2.10 16 27 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 28 H 0.26 14.02 8.32 -92.71 -0.77 13.24 16 29 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 30 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.07 3.17 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -57.03 271.61 3.36 -53.68 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.41 Total: 23.78 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 3.64 Total: -40.56 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.72 Total: -82.19 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -57.03 3.36 -53.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229211101.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.462 kcal (2) G-P(sol) polarization free energy of solvation -57.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds