Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00115 * 2 1 4 4 N 1.46897 * 109.47022 * 124.99807 * 3 2 1 5 5 C 1.46850 * 111.00102 * 45.79009 * 4 3 2 6 6 C 1.53037 * 109.52463 * 185.83501 * 5 4 3 7 7 C 1.53117 * 109.28299 * 300.82468 * 6 5 4 8 8 C 1.53122 * 109.15987 * 57.65216 * 7 6 5 9 9 C 1.46844 * 111.00147 * 170.00163 * 4 3 2 10 10 H 1.08997 * 109.46251 * 294.16898 * 9 4 3 11 11 C 1.50702 * 109.46068 * 54.14350 * 9 4 3 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 9 4 13 13 C 1.37884 * 119.99942 * 179.72220 * 11 9 4 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.08003 * 120.00001 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.00467 * 179.97438 * 1 2 3 21 21 H 1.07994 * 120.00243 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47066 * 5.00343 * 3 2 1 23 23 H 1.08996 * 109.47585 * 244.99894 * 3 2 1 24 24 H 1.08996 * 109.46458 * 305.85425 * 5 4 3 25 25 H 1.09004 * 109.45741 * 65.82447 * 5 4 3 26 26 H 1.09001 * 109.49929 * 60.76790 * 6 5 4 27 27 H 1.08994 * 109.50473 * 180.88055 * 6 5 4 28 28 H 1.08992 * 109.52236 * 177.55659 * 7 6 5 29 29 H 1.08994 * 109.52261 * 297.68973 * 7 6 5 30 30 H 1.08995 * 109.50370 * 182.40542 * 8 7 6 31 31 H 1.09000 * 109.50458 * 62.28367 * 8 7 6 32 32 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 3.7351 0.0672 1.2384 6 6 4.5866 0.0752 2.5100 7 6 5.5615 1.2547 2.4583 8 6 4.7689 2.5554 2.3015 9 6 3.9122 2.4755 1.0358 10 1 4.5586 2.3492 0.1673 11 6 3.1151 3.7459 0.8880 12 1 2.0360 3.7074 0.8696 13 6 3.7635 4.9582 0.7824 14 7 5.0776 5.0052 0.8051 15 14 2.7754 6.5336 0.6068 16 1 2.4845 7.0882 1.9533 17 1 3.5568 7.5232 -0.1778 18 1 1.4994 6.2422 -0.0947 19 1 -0.5400 0.9353 0.0004 20 1 -0.5401 -0.9353 -0.0004 21 1 1.8499 -0.9352 -0.0004 22 1 1.3585 2.1317 0.0896 23 1 2.6213 1.4027 -0.9313 24 1 3.0301 -0.7631 1.2786 25 1 4.3823 -0.0477 0.3688 26 1 3.9389 0.1762 3.3809 27 1 5.1468 -0.8572 2.5787 28 1 6.1400 1.2898 3.3814 29 1 6.2354 1.1334 1.6104 30 1 5.4594 3.3949 2.2212 31 1 4.1240 2.6955 3.1690 32 1 5.5338 5.8580 0.7304 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259212772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = -1.406150 kcal Electronic energy + Delta-G solvation = -12786.747277 eV Core-core repulsion = 10746.648385 eV Total energy + Delta-G solvation = -2040.098892 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.91143 -35.86919 -34.87676 -32.75168 -31.27144 -27.48896 -26.60404 -23.91290 -22.84671 -20.59149 -20.05039 -18.49493 -17.07556 -16.49180 -15.72638 -15.55820 -14.96914 -14.60710 -14.35488 -14.10331 -13.87038 -13.17293 -12.83632 -12.65544 -12.50981 -12.28787 -11.98063 -11.90177 -11.77472 -11.40571 -10.83930 -10.76903 -10.41897 -10.29829 -8.86272 -8.11485 -6.23976 1.40261 1.41172 1.44245 1.51347 2.41176 3.14990 3.48404 4.03368 4.17443 4.19004 4.33824 4.37631 4.61509 4.70176 4.82675 4.86303 4.99047 5.03379 5.09182 5.14319 5.25630 5.33976 5.46207 5.63233 5.71071 5.77897 5.81084 5.98587 6.29062 6.43292 6.79070 6.91496 7.45195 8.93717 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.029618 B = 0.014293 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.139302 B = 1958.503298 C = 2769.266495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.162 4.162 3 C 0.093 3.907 4 N -0.538 5.538 5 C 0.049 3.951 6 C -0.106 4.106 7 C -0.119 4.119 8 C -0.100 4.100 9 C 0.223 3.777 10 H -0.044 1.044 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.959 3.041 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.269 1.269 19 H 0.091 0.909 20 H 0.124 0.876 21 H 0.122 0.878 22 H 0.062 0.938 23 H 0.012 0.988 24 H 0.092 0.908 25 H 0.010 0.990 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -9.086 0.721 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C -0.034 4.034 4 N -0.263 5.263 5 C -0.079 4.079 6 C -0.143 4.143 7 C -0.156 4.156 8 C -0.138 4.138 9 C 0.116 3.884 10 H -0.027 1.027 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.785 3.215 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.193 1.193 19 H 0.109 0.891 20 H 0.142 0.858 21 H 0.140 0.860 22 H 0.080 0.920 23 H 0.030 0.970 24 H 0.110 0.890 25 H 0.029 0.971 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.150 -8.896 1.134 9.881 hybrid contribution 0.388 1.174 -0.993 1.586 sum -3.762 -7.721 0.141 8.590 Atomic orbital electron populations 1.23964 0.95262 1.02612 0.99598 1.23035 0.96637 0.97361 1.00962 1.21025 0.95097 0.96127 0.91160 1.62128 1.19610 1.03021 1.41553 1.22250 0.96069 0.92809 0.96785 1.21547 0.97195 0.98008 0.97595 1.21623 0.97739 0.95785 1.00483 1.21452 0.98057 0.97128 0.97179 1.19045 0.89395 0.87964 0.92021 1.02662 1.21486 0.93257 0.91967 1.49546 0.92541 1.25725 0.95901 1.02151 0.94937 1.70029 1.08344 1.26258 1.51230 0.85539 0.78684 0.79104 0.78215 1.20051 1.20845 1.19347 0.89089 0.85839 0.86044 0.91968 0.96984 0.88975 0.97139 0.91708 0.89534 0.91612 0.94123 0.91929 0.95003 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.66 14.32 67.79 0.97 -3.69 16 2 C -0.16 -5.02 8.56 25.66 0.22 -4.80 16 3 C 0.09 3.84 5.10 85.56 0.44 4.28 16 4 N -0.54 -24.00 4.63 -880.04 -4.07 -28.07 16 5 C 0.05 1.77 5.00 86.33 0.43 2.21 16 6 C -0.11 -3.55 6.09 30.65 0.19 -3.37 16 7 C -0.12 -4.69 6.00 30.67 0.18 -4.51 16 8 C -0.10 -4.97 5.13 30.65 0.16 -4.81 16 9 C 0.22 11.80 1.79 44.19 0.08 11.88 16 10 H -0.04 -2.63 8.14 -2.39 -0.02 -2.65 16 11 C -0.52 -29.81 8.01 25.60 0.20 -29.60 16 12 H 0.06 3.20 6.33 -2.91 -0.02 3.18 16 13 C 0.01 0.65 5.30 84.66 0.45 1.10 16 14 N -0.92 -54.02 11.32 21.45 0.24 -53.77 16 15 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H 0.09 2.48 7.84 -2.91 -0.02 2.46 16 20 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 21 H 0.12 3.29 6.48 -2.91 -0.02 3.27 16 22 H 0.06 2.76 6.21 -2.38 -0.01 2.74 16 23 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 24 H 0.09 2.81 5.79 -2.39 -0.01 2.80 16 25 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 3.49 6.08 -2.39 -0.01 3.48 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -62.16 252.27 2.58 -59.58 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.07 Total: 7.01 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.32 Total: -31.32 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.83 Total: -81.84 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -62.16 2.58 -59.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259212772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -62.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds