Wall clock time and date at job start Mon Mar 30 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99700 * 2 1 4 4 H 1.48502 * 109.47134 * 239.99961 * 3 2 1 5 5 H 1.48500 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47198 * 119.99937 * 3 2 1 7 7 C 1.37871 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99948 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.46819 * 299.98112 * 9 7 2 11 11 C 1.53037 * 109.46111 * 59.94740 * 9 7 2 12 12 C 1.53124 * 109.28148 * 179.19369 * 11 9 7 13 13 C 1.53119 * 109.15796 * 302.35024 * 12 11 9 14 14 C 1.53032 * 109.28205 * 57.65213 * 13 12 11 15 15 N 1.46844 * 109.46449 * 179.97438 * 9 7 2 16 16 C 1.46906 * 110.99887 * 54.14612 * 15 9 7 17 17 C 1.52994 * 117.49894 * 243.62248 * 16 15 9 18 18 C 1.52998 * 60.00215 * 252.51018 * 17 16 15 19 19 H 0.97007 * 120.00137 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.50540 * 299.13856 * 11 9 7 21 21 H 1.09000 * 109.50451 * 59.25767 * 11 9 7 22 22 H 1.09001 * 109.52004 * 62.24831 * 12 11 9 23 23 H 1.08999 * 109.52499 * 182.44152 * 12 11 9 24 24 H 1.09004 * 109.50312 * 177.59656 * 13 12 11 25 25 H 1.09002 * 109.50493 * 297.66576 * 13 12 11 26 26 H 1.09005 * 109.46340 * 180.80370 * 14 13 12 27 27 H 1.08998 * 109.46572 * 60.83585 * 14 13 12 28 28 H 1.08997 * 115.54479 * 29.33206 * 16 15 9 29 29 H 1.09002 * 117.50477 * 359.97438 * 17 16 15 30 30 H 1.09000 * 117.49859 * 145.02104 * 17 16 15 31 31 H 1.08997 * 117.49914 * 252.51204 * 18 17 16 32 32 H 1.09001 * 117.51881 * 107.47685 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6251 -2.5563 0.8921 11 6 0.3699 -2.5802 -1.2469 12 6 -0.3783 -3.9162 -1.2517 13 6 0.6373 -5.0610 -1.2021 14 6 1.5107 -4.9080 0.0452 15 7 2.2055 -3.6150 0.0015 16 6 3.1590 -3.4925 1.1123 17 6 4.6354 -3.3035 0.7584 18 6 4.1492 -4.6397 1.3232 19 1 -0.4851 0.8401 0.0004 20 1 -0.3487 -1.7607 -1.2390 21 1 0.9937 -2.5093 -2.1379 22 1 -1.0317 -3.9709 -0.3810 23 1 -0.9740 -3.9968 -2.1610 24 1 0.1097 -6.0141 -1.1623 25 1 1.2649 -5.0297 -2.0927 26 1 2.2442 -5.7137 0.0760 27 1 0.8836 -4.9538 0.9355 28 1 2.7843 -2.9816 1.9992 29 1 4.8995 -3.2705 -0.2987 30 1 5.2324 -2.6680 1.4124 31 1 4.4262 -4.8832 2.3489 32 1 4.0928 -5.4855 0.6380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259363327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:52 Heat of formation + Delta-G solvation = 2.549384 kcal Electronic energy + Delta-G solvation = -12928.488830 eV Core-core repulsion = 10888.561462 eV Total energy + Delta-G solvation = -2039.927368 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.03303 -37.01734 -34.87276 -32.42975 -31.26725 -27.19901 -24.84107 -23.51417 -22.62034 -21.37597 -20.33462 -18.50684 -17.24995 -16.38982 -15.87817 -15.31124 -14.92993 -14.72643 -14.29993 -14.04723 -13.52084 -13.07201 -12.79515 -12.62821 -12.33482 -12.22160 -11.96661 -11.80139 -11.59341 -11.22805 -11.13607 -10.76416 -10.66328 -10.35975 -8.85139 -8.08588 -6.19570 1.40906 1.42827 1.50308 2.42816 3.06918 3.16957 3.27115 4.12844 4.17554 4.20320 4.24943 4.37293 4.52062 4.67496 4.77035 4.83673 4.89441 4.97772 5.06354 5.10008 5.21242 5.26654 5.31081 5.41200 5.48506 5.65818 5.80945 5.82794 6.31689 6.50404 6.80214 6.96786 7.49081 8.96672 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.015497 C = 0.010932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.255521 B = 1806.407503 C = 2560.655858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.228 3.772 10 H -0.046 1.046 11 C -0.101 4.101 12 C -0.119 4.119 13 C -0.106 4.106 14 C 0.054 3.946 15 N -0.515 5.515 16 C 0.009 3.991 17 C -0.165 4.165 18 C -0.160 4.160 19 H 0.260 0.740 20 H 0.062 0.938 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.010 0.990 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -8.538 0.130 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.121 3.879 10 H -0.029 1.029 11 C -0.139 4.139 12 C -0.156 4.156 13 C -0.143 4.143 14 C -0.073 4.073 15 N -0.239 5.239 16 C -0.100 4.100 17 C -0.202 4.202 18 C -0.197 4.197 19 H 0.069 0.931 20 H 0.081 0.919 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.330 -8.398 -0.310 9.453 hybrid contribution -0.403 1.304 0.853 1.610 sum 3.926 -7.094 0.544 8.126 Atomic orbital electron populations 1.70021 1.07154 1.27141 1.51918 1.25704 0.95670 1.02331 0.95164 0.85628 0.78318 0.79012 0.78770 1.19690 1.21016 1.19794 1.21448 0.93450 0.91004 1.49445 0.92208 1.18985 0.88802 0.88183 0.91891 1.02856 1.21472 0.98320 0.96683 0.97474 1.21627 0.97768 0.95699 1.00537 1.21548 0.96871 0.98079 0.97816 1.22145 0.96470 0.92091 0.96634 1.61842 1.18148 1.02415 1.41498 1.22089 0.90363 1.03623 0.93963 1.22948 0.96150 0.99721 1.01429 1.23181 1.01909 0.92023 1.02583 0.93087 0.91935 0.94996 0.94142 0.91602 0.89531 0.91669 0.89456 0.97184 0.92395 0.89496 0.88714 0.87289 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 11.32 21.44 0.24 -54.17 16 2 C 0.01 0.53 5.30 84.65 0.45 0.98 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.51 -29.16 8.02 25.60 0.21 -28.95 16 8 H 0.06 3.37 6.75 -2.91 -0.02 3.35 16 9 C 0.23 12.03 1.77 44.19 0.08 12.11 16 10 H -0.05 -2.75 8.14 -2.39 -0.02 -2.77 16 11 C -0.10 -5.02 5.14 30.65 0.16 -4.87 16 12 C -0.12 -4.68 6.00 30.68 0.18 -4.50 16 13 C -0.11 -3.52 6.09 30.64 0.19 -3.33 16 14 C 0.05 1.97 5.29 86.32 0.46 2.43 16 15 N -0.51 -22.64 4.64 -850.41 -3.95 -26.59 16 16 C 0.01 0.36 4.13 44.91 0.19 0.54 16 17 C -0.16 -5.67 9.96 30.59 0.30 -5.37 16 18 C -0.16 -4.71 9.68 30.59 0.30 -4.41 16 19 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 20 H 0.06 3.49 6.09 -2.39 -0.01 3.47 16 21 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.09 2.66 6.41 -2.38 -0.02 2.64 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 2.62 8.03 -2.39 -0.02 2.60 16 29 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.10 2.80 6.92 -2.39 -0.02 2.79 16 Total: -1.00 -62.02 252.12 1.89 -60.12 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.07 Total: 9.21 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 2.50 Total: -35.36 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.71 Total: -80.76 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.02 1.89 -60.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.670 kcal (2) G-P(sol) polarization free energy of solvation -62.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds