Wall clock time and date at job start Mon Mar 30 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46631 * 59.97967 * 9 7 2 11 11 C 1.53043 * 109.46551 * 300.00057 * 9 7 2 12 12 C 1.53118 * 109.28180 * 180.80678 * 11 9 7 13 13 C 1.53120 * 109.15852 * 57.65304 * 12 11 9 14 14 C 1.53040 * 109.28019 * 302.34345 * 13 12 11 15 15 N 1.46846 * 109.46333 * 179.97438 * 9 7 2 16 16 C 1.46905 * 110.99535 * 305.85272 * 15 9 7 17 17 C 1.53000 * 117.49880 * 243.62391 * 16 15 9 18 18 C 1.52999 * 117.49947 * 174.99925 * 16 15 9 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.50195 * 300.74999 * 11 9 7 21 21 H 1.09003 * 109.50262 * 60.82481 * 11 9 7 22 22 H 1.08999 * 109.52393 * 177.55781 * 12 11 9 23 23 H 1.09003 * 109.51955 * 297.74706 * 12 11 9 24 24 H 1.08999 * 109.50349 * 62.28851 * 13 12 11 25 25 H 1.08999 * 109.49763 * 182.40985 * 13 12 11 26 26 H 1.08994 * 109.46193 * 179.19620 * 14 13 12 27 27 H 1.08998 * 109.46343 * 299.17691 * 14 13 12 28 28 H 1.09002 * 115.55083 * 29.33379 * 16 15 9 29 29 H 1.08994 * 117.50073 * 359.97438 * 17 16 15 30 30 H 1.08998 * 117.49754 * 145.02521 * 17 16 15 31 31 H 1.09000 * 117.50136 * 214.98433 * 18 16 15 32 32 H 1.09007 * 117.49731 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6238 -2.5564 -0.8901 11 6 0.3717 -2.5803 1.2494 12 6 -0.3765 -3.9163 1.2554 13 6 0.6390 -5.0612 1.2042 14 6 1.5105 -4.9082 -0.0445 15 7 2.2054 -3.6152 -0.0018 16 6 3.1572 -3.4927 -1.1141 17 6 3.1351 -4.5840 -2.1862 18 6 4.2928 -4.5153 -1.1881 19 1 -0.4850 0.8401 0.0004 20 1 0.9970 -2.5094 2.1395 21 1 -0.3465 -1.7604 1.2430 22 1 -0.9708 -3.9969 2.1655 23 1 -1.0313 -3.9709 0.3856 24 1 1.2684 -5.0293 2.0935 25 1 0.1112 -6.0141 1.1650 26 1 2.2439 -5.7138 -0.0764 27 1 0.8820 -4.9537 -0.9339 28 1 3.3751 -2.4744 -1.4364 29 1 2.4148 -5.3931 -2.0660 30 1 3.3385 -4.2839 -3.2141 31 1 5.2577 -4.1700 -1.5594 32 1 4.3340 -5.2788 -0.4112 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:55 Heat of formation + Delta-G solvation = 22.463305 kcal Electronic energy + Delta-G solvation = -12940.693743 eV Core-core repulsion = 10901.629908 eV Total energy + Delta-G solvation = -2039.063835 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.67791 -35.42079 -32.90574 -30.67693 -29.39577 -25.22421 -23.50701 -21.83772 -21.31822 -19.72767 -18.40005 -16.45031 -15.72853 -14.67211 -14.27700 -13.50195 -13.25492 -12.91804 -12.84654 -12.30023 -11.62765 -11.31344 -11.07284 -10.91377 -10.73033 -10.44877 -10.21566 -10.14482 -10.01770 -9.78648 -9.50006 -9.12502 -8.75017 -8.37258 -7.01900 -6.00500 -4.04954 3.32733 3.37143 3.40253 4.39127 4.50849 4.92455 5.29960 5.53714 5.60268 5.63262 5.67412 5.78911 5.99669 6.11412 6.20275 6.31801 6.37804 6.44741 6.58962 6.62421 6.78675 6.82325 6.92416 7.13824 7.27811 7.60862 7.75372 7.84474 8.22448 8.36258 8.61995 9.01771 9.59532 11.05875 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.014572 C = 0.010838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.113001 B = 1921.013332 C = 2582.809091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.221 3.779 10 H 0.000 1.000 11 C -0.106 4.106 12 C -0.123 4.123 13 C -0.113 4.113 14 C 0.055 3.945 15 N -0.504 5.504 16 C 0.055 3.945 17 C -0.234 4.234 18 C -0.189 4.189 19 H 0.261 0.739 20 H 0.043 0.957 21 H 0.094 0.906 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -7.028 -0.634 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.115 3.885 10 H 0.018 0.982 11 C -0.144 4.144 12 C -0.161 4.161 13 C -0.150 4.150 14 C -0.073 4.073 15 N -0.226 5.226 16 C -0.055 4.055 17 C -0.273 4.273 18 C -0.227 4.227 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.113 0.887 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.462 -6.856 -0.167 7.287 hybrid contribution 0.003 0.743 -0.777 1.075 sum 2.465 -6.113 -0.943 6.659 Atomic orbital electron populations 1.69879 1.05889 1.26619 1.50740 1.24929 0.94872 0.99091 0.95194 0.86593 0.79492 0.82888 0.78636 1.21377 1.20191 1.20355 1.21152 0.93309 0.89780 1.50317 0.91845 1.19211 0.88812 0.87016 0.93460 0.98191 1.21664 0.99055 0.95045 0.98680 1.21694 0.97406 0.97127 0.99860 1.21568 0.97525 0.97594 0.98353 1.22070 0.95719 0.92945 0.96552 1.61860 1.18695 1.02385 1.39664 1.22739 0.96121 0.95289 0.91394 1.23479 1.02718 1.05052 0.96057 1.22986 0.93591 1.04224 1.01871 0.92908 0.93827 0.88733 0.93677 0.93363 0.91891 0.93246 0.92467 0.95746 0.85317 0.89172 0.89812 0.89515 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 11.33 55.43 0.63 -24.63 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.83 7.59 -34.44 -0.26 -14.09 16 8 H 0.06 1.73 6.72 -52.49 -0.35 1.37 16 9 C 0.22 5.60 1.83 -68.87 -0.13 5.47 16 10 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 11 C -0.11 -2.56 5.14 -26.65 -0.14 -2.70 16 12 C -0.12 -2.46 6.00 -26.61 -0.16 -2.62 16 13 C -0.11 -2.02 6.09 -26.65 -0.16 -2.19 16 14 C 0.06 1.06 4.09 -3.83 -0.02 1.04 16 15 N -0.50 -11.15 4.69 -220.14 -1.03 -12.19 16 16 C 0.05 1.12 5.63 -67.71 -0.38 0.74 16 17 C -0.23 -4.01 9.51 -26.73 -0.25 -4.26 16 18 C -0.19 -3.17 9.97 -26.73 -0.27 -3.43 16 19 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 20 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 21 H 0.09 2.51 6.10 -51.93 -0.32 2.20 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.99 6.49 -51.93 -0.34 0.65 16 27 H 0.02 0.48 7.35 -51.93 -0.38 0.10 16 28 H 0.13 2.85 6.29 -51.93 -0.33 2.53 16 29 H 0.09 1.50 5.91 -51.93 -0.31 1.20 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.42 7.55 -51.93 -0.39 1.03 16 LS Contribution 247.88 15.07 3.74 3.74 Total: -1.00 -27.63 247.88 -8.48 -36.11 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.93 Total: 1.23 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -1.86 Total: -20.48 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.40 Total: -36.81 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.63 -8.48 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.577 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds