Wall clock time and date at job start Mon Mar 30 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46631 * 59.97967 * 9 7 2 11 11 C 1.53043 * 109.46551 * 300.00057 * 9 7 2 12 12 C 1.53118 * 109.28180 * 180.80678 * 11 9 7 13 13 C 1.53120 * 109.15852 * 57.65304 * 12 11 9 14 14 C 1.53040 * 109.28019 * 302.34345 * 13 12 11 15 15 N 1.46846 * 109.46333 * 179.97438 * 9 7 2 16 16 C 1.46905 * 110.99535 * 305.85272 * 15 9 7 17 17 C 1.53000 * 117.49880 * 243.62391 * 16 15 9 18 18 C 1.52999 * 117.49947 * 174.99925 * 16 15 9 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.50195 * 300.74999 * 11 9 7 21 21 H 1.09003 * 109.50262 * 60.82481 * 11 9 7 22 22 H 1.08999 * 109.52393 * 177.55781 * 12 11 9 23 23 H 1.09003 * 109.51955 * 297.74706 * 12 11 9 24 24 H 1.08999 * 109.50349 * 62.28851 * 13 12 11 25 25 H 1.08999 * 109.49763 * 182.40985 * 13 12 11 26 26 H 1.08994 * 109.46193 * 179.19620 * 14 13 12 27 27 H 1.08998 * 109.46343 * 299.17691 * 14 13 12 28 28 H 1.09002 * 115.55083 * 29.33379 * 16 15 9 29 29 H 1.08994 * 117.50073 * 359.97438 * 17 16 15 30 30 H 1.08998 * 117.49754 * 145.02521 * 17 16 15 31 31 H 1.09000 * 117.50136 * 214.98433 * 18 16 15 32 32 H 1.09007 * 117.49731 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6238 -2.5564 -0.8901 11 6 0.3717 -2.5803 1.2494 12 6 -0.3765 -3.9163 1.2554 13 6 0.6390 -5.0612 1.2042 14 6 1.5105 -4.9082 -0.0445 15 7 2.2054 -3.6152 -0.0018 16 6 3.1572 -3.4927 -1.1141 17 6 3.1351 -4.5840 -2.1862 18 6 4.2928 -4.5153 -1.1881 19 1 -0.4850 0.8401 0.0004 20 1 0.9970 -2.5094 2.1395 21 1 -0.3465 -1.7604 1.2430 22 1 -0.9708 -3.9969 2.1655 23 1 -1.0313 -3.9709 0.3856 24 1 1.2684 -5.0293 2.0935 25 1 0.1112 -6.0141 1.1650 26 1 2.2439 -5.7138 -0.0764 27 1 0.8820 -4.9537 -0.9339 28 1 3.3751 -2.4744 -1.4364 29 1 2.4148 -5.3931 -2.0660 30 1 3.3385 -4.2839 -3.2141 31 1 5.2577 -4.1700 -1.5594 32 1 4.3340 -5.2788 -0.4112 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259363330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:55 Heat of formation + Delta-G solvation = 5.772381 kcal Electronic energy + Delta-G solvation = -12941.417516 eV Core-core repulsion = 10901.629908 eV Total energy + Delta-G solvation = -2039.787608 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30649 -37.00826 -34.88369 -32.35213 -31.20730 -27.21129 -25.13973 -23.27547 -23.04800 -21.36658 -20.10625 -18.39496 -17.47330 -16.45760 -15.96435 -15.12138 -14.93485 -14.70924 -14.41545 -14.05021 -13.40445 -12.95959 -12.77186 -12.62373 -12.46919 -12.15378 -11.92832 -11.81764 -11.76549 -11.36142 -11.23565 -10.79625 -10.69909 -10.40264 -8.71440 -8.10296 -6.22069 1.41561 1.43383 1.50953 2.42007 3.00037 3.16431 3.40645 4.05539 4.10716 4.17244 4.20066 4.33199 4.45006 4.65573 4.76439 4.79075 4.83132 4.99388 5.06323 5.12477 5.20055 5.24660 5.31157 5.35274 5.45789 5.64551 5.78205 5.81790 6.29913 6.46851 6.78684 6.93706 7.46389 8.94847 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.014572 C = 0.010838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.113001 B = 1921.013332 C = 2582.809091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.228 3.772 10 H -0.042 1.042 11 C -0.102 4.102 12 C -0.118 4.118 13 C -0.107 4.107 14 C 0.052 3.948 15 N -0.512 5.512 16 C 0.009 3.991 17 C -0.218 4.218 18 C -0.160 4.160 19 H 0.261 0.739 20 H 0.031 0.969 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -8.465 -0.534 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.121 3.879 10 H -0.025 1.025 11 C -0.140 4.140 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.075 4.075 15 N -0.234 5.234 16 C -0.100 4.100 17 C -0.257 4.257 18 C -0.197 4.197 19 H 0.070 0.930 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.035 0.965 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.512 -8.312 -0.074 9.023 hybrid contribution -0.305 1.167 -0.848 1.475 sum 3.207 -7.145 -0.922 7.885 Atomic orbital electron populations 1.70019 1.07167 1.27281 1.51416 1.25705 0.95689 1.02349 0.94898 0.85605 0.78314 0.78880 0.78796 1.20920 1.19713 1.19703 1.21435 0.93202 0.91212 1.50216 0.92476 1.18954 0.88906 0.88013 0.92006 1.02500 1.21486 0.98355 0.96700 0.97492 1.21622 0.97732 0.95621 1.00618 1.21565 0.96923 0.98182 0.97782 1.22213 0.96340 0.92073 0.96898 1.61864 1.18116 1.02566 1.40862 1.22670 0.98689 0.95341 0.93340 1.23520 1.02877 1.03128 0.96135 1.23055 0.93500 1.01886 1.01295 0.92962 0.94982 0.91856 0.91551 0.94040 0.91685 0.89503 0.89870 0.96481 0.88283 0.88357 0.88621 0.87576 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.72 11.33 21.45 0.24 -53.48 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.52 -29.40 7.59 25.60 0.19 -29.21 16 8 H 0.06 3.20 6.72 -2.91 -0.02 3.19 16 9 C 0.23 11.94 1.83 44.19 0.08 12.02 16 10 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 11 C -0.10 -5.04 5.14 30.65 0.16 -4.88 16 12 C -0.12 -4.64 6.00 30.67 0.18 -4.45 16 13 C -0.11 -3.57 6.09 30.65 0.19 -3.38 16 14 C 0.05 1.90 4.09 86.33 0.35 2.26 16 15 N -0.51 -22.56 4.69 -850.38 -3.99 -26.55 16 16 C 0.01 0.38 5.63 44.91 0.25 0.63 16 17 C -0.22 -6.99 9.51 30.60 0.29 -6.70 16 18 C -0.16 -4.90 9.97 30.60 0.31 -4.60 16 19 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 20 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 21 H 0.06 3.50 6.10 -2.39 -0.01 3.49 16 22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.08 2.59 6.49 -2.39 -0.02 2.57 16 27 H 0.02 0.64 7.35 -2.39 -0.02 0.63 16 28 H 0.10 4.53 6.29 -2.39 -0.02 4.52 16 29 H 0.10 3.01 5.91 -2.39 -0.01 2.99 16 30 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.10 2.82 7.55 -2.38 -0.02 2.80 16 Total: -1.00 -60.91 247.88 1.81 -59.09 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.08 Total: 11.80 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 2.45 Total: -37.17 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.75 Total: -80.03 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.91 1.81 -59.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.864 kcal (2) G-P(sol) polarization free energy of solvation -60.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds