Wall clock time and date at job start Mon Mar 30 2020 01:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48504 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47128 * 300.00263 * 3 2 1 6 6 H 1.48501 * 109.47104 * 60.00169 * 3 2 1 7 7 C 1.37879 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00065 * 359.97438 * 7 2 1 10 10 H 1.08995 * 108.83830 * 58.66154 * 9 7 2 11 11 C 1.52882 * 108.93332 * 177.30627 * 9 7 2 12 12 C 1.53048 * 109.10559 * 184.73623 * 11 9 7 13 13 C 1.51838 * 108.56589 * 30.95293 * 12 11 9 14 14 C 1.51040 * 112.52630 * 274.34263 * 13 12 11 15 15 N 1.44458 * 112.28459 * 16.46460 * 14 13 12 16 16 C 1.46939 * 113.46292 * 297.67003 * 15 14 13 17 17 C 1.51489 * 111.82701 * 48.74652 * 16 15 14 18 18 C 1.47119 * 116.72604 * 67.18435 * 15 14 13 19 19 H 0.97001 * 120.00209 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.05689 * 64.53045 * 11 9 7 21 21 H 1.08999 * 109.00531 * 304.30866 * 11 9 7 22 22 H 1.09002 * 108.14432 * 148.12538 * 12 11 9 23 23 H 1.08992 * 108.97574 * 35.32187 * 13 12 11 24 24 H 1.08996 * 108.97385 * 154.02990 * 13 12 11 25 25 H 1.09010 * 109.37773 * 255.49798 * 14 13 12 26 26 H 1.09000 * 108.55314 * 136.87306 * 14 13 12 27 27 H 1.08990 * 109.01289 * 288.13729 * 16 15 14 28 28 H 1.09002 * 108.94479 * 169.29669 * 16 15 14 29 29 H 1.09008 * 108.71071 * 246.25168 * 17 16 15 30 30 H 1.08996 * 108.61936 * 128.16920 * 17 16 15 31 31 H 1.09002 * 109.23703 * 84.24561 * 18 15 14 32 32 H 1.08996 * 109.24042 * 203.63758 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6101 -2.5355 -0.8814 11 6 2.2540 -3.6510 -0.0691 12 6 1.4916 -4.9726 -0.1887 13 6 0.1965 -4.7174 -0.9392 14 6 -0.9174 -4.2545 -0.0302 15 7 -0.4262 -3.7968 1.2489 16 6 0.2546 -4.8439 2.0229 17 6 1.2780 -5.5860 1.1880 18 6 0.3816 -2.5672 1.2459 19 1 -0.4850 0.8400 0.0004 20 1 2.8691 -3.6652 0.8307 21 1 2.8897 -3.5165 -0.9443 22 1 2.0966 -5.6614 -0.7784 23 1 0.3718 -3.9572 -1.7003 24 1 -0.1178 -5.6399 -1.4274 25 1 -1.6154 -5.0756 0.1336 26 1 -1.4457 -3.4355 -0.5184 27 1 -0.4870 -5.5538 2.3890 28 1 0.7569 -4.3846 2.8743 29 1 0.9468 -6.6171 1.0639 30 1 2.2283 -5.5866 1.7219 31 1 -0.2811 -1.7021 1.2692 32 1 1.0192 -2.5542 2.1298 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259720177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:43 Heat of formation + Delta-G solvation = -3.759329 kcal Electronic energy + Delta-G solvation = -13312.982446 eV Core-core repulsion = 11272.781512 eV Total energy + Delta-G solvation = -2040.200934 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.69800 -33.62703 -32.63393 -30.85036 -30.36314 -25.54057 -24.16456 -22.72236 -22.50489 -18.86765 -17.21187 -16.61084 -15.58361 -14.92816 -14.48616 -14.14279 -12.86722 -12.54680 -12.39839 -12.18219 -11.87565 -11.63162 -11.53400 -11.03389 -10.95761 -10.57690 -10.38156 -9.89600 -9.76012 -9.57899 -9.27984 -9.00620 -8.98076 -8.22390 -7.05519 -5.97103 -4.01960 3.30127 3.38483 3.42211 4.44604 4.97294 5.28352 5.35806 5.41543 5.49561 5.76781 5.92620 6.01177 6.16967 6.28539 6.35313 6.41227 6.49966 6.59421 6.69194 6.75284 6.85559 6.95419 7.02022 7.18200 7.43232 7.72100 7.90949 8.07211 8.24067 8.37448 8.59149 9.02896 9.61322 11.08245 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.055879 B = 0.012278 C = 0.011708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.960294 B = 2279.987997 C = 2390.903096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.014 3.986 10 H 0.038 0.962 11 C -0.104 4.104 12 C -0.084 4.084 13 C -0.144 4.144 14 C 0.089 3.911 15 N -0.567 5.567 16 C 0.067 3.933 17 C -0.136 4.136 18 C 0.075 3.925 19 H 0.260 0.740 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -8.043 1.031 8.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.071 0.929 9 C -0.006 4.006 10 H 0.056 0.944 11 C -0.142 4.142 12 C -0.103 4.103 13 C -0.183 4.183 14 C -0.040 4.040 15 N -0.289 5.289 16 C -0.061 4.061 17 C -0.176 4.176 18 C -0.051 4.051 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.300 -7.789 1.248 7.894 hybrid contribution 1.304 0.677 -0.503 1.553 sum 1.003 -7.112 0.745 7.221 Atomic orbital electron populations 1.69862 1.05737 1.26281 1.50852 1.24978 0.94866 0.98995 0.95195 0.86583 0.80123 0.84020 0.77552 1.19933 1.21115 1.21020 1.21262 0.92879 0.90703 1.50395 0.92894 1.19223 0.93530 0.91900 0.95930 0.94397 1.21763 0.98372 0.94152 0.99920 1.20637 0.96564 0.97978 0.95112 1.21687 0.96383 1.00370 0.99884 1.20800 0.95419 0.99039 0.88695 1.59819 1.44319 1.05723 1.19032 1.21742 0.94469 0.93926 0.96001 1.21625 1.00131 0.98975 0.96832 1.22274 0.95359 0.89895 0.97570 0.93020 0.93611 0.93528 0.93298 0.90975 0.94011 0.92958 0.91129 0.92809 0.91942 0.93445 0.92673 0.87623 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 11.26 55.43 0.62 -24.62 16 2 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.13 8.51 -34.44 -0.29 -14.43 16 8 H 0.05 1.46 7.73 -52.49 -0.41 1.05 16 9 C 0.01 0.34 1.60 -92.28 -0.15 0.19 16 10 H 0.04 1.02 5.22 -51.93 -0.27 0.75 16 11 C -0.10 -2.24 4.77 -26.77 -0.13 -2.37 16 12 C -0.08 -1.54 2.82 -91.58 -0.26 -1.80 16 13 C -0.14 -2.66 5.08 -28.31 -0.14 -2.80 16 14 C 0.09 1.73 5.38 -6.12 -0.03 1.69 16 15 N -0.57 -11.80 4.62 -239.20 -1.11 -12.91 16 16 C 0.07 1.20 5.95 -4.57 -0.03 1.17 16 17 C -0.14 -2.28 5.35 -27.89 -0.15 -2.42 16 18 C 0.07 1.80 5.13 -4.15 -0.02 1.78 16 19 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 20 H 0.05 0.98 7.63 -51.93 -0.40 0.58 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 1.46 6.23 -51.93 -0.32 1.13 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.11 7.29 -51.93 -0.38 0.73 16 29 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.05 0.88 7.84 -51.93 -0.41 0.47 16 31 H 0.11 2.89 5.89 -51.93 -0.31 2.59 16 32 H 0.04 0.94 7.18 -51.93 -0.37 0.57 16 LS Contribution 236.85 15.07 3.57 3.57 Total: -1.00 -27.72 236.85 -8.18 -35.90 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.95 Total: -0.85 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.30 Total: -17.41 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.48 Total: -37.52 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.72 -8.18 -35.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.144 kcal (2) G-P(sol) polarization free energy of solvation -27.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds