Wall clock time and date at job start Mon Mar 30 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99643 * 2 1 4 4 H 1.48497 * 109.46844 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46930 * 299.99896 * 3 2 1 6 6 H 1.48494 * 109.47442 * 59.99883 * 3 2 1 7 7 C 1.37875 * 120.00606 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50421 * 119.99736 * 359.97438 * 7 2 1 10 10 H 1.12383 * 105.27648 * 295.58941 * 9 7 2 11 11 C 1.53045 * 112.62715 * 179.97438 * 9 7 2 12 12 C 1.51970 * 113.77783 * 275.80077 * 11 9 7 13 13 C 1.51784 * 112.81707 * 42.84517 * 12 11 9 14 14 C 1.52354 * 112.13245 * 280.35170 * 13 12 11 15 15 N 1.46471 * 109.78588 * 1.89486 * 14 13 12 16 16 C 1.44052 * 111.18965 * 299.38051 * 15 14 13 17 17 C 1.52116 * 112.05084 * 274.07800 * 12 11 9 18 18 C 1.42778 * 115.75834 * 77.56170 * 15 14 13 19 19 H 0.96994 * 120.00182 * 359.97438 * 1 2 3 20 20 H 1.10462 * 109.35296 * 153.38851 * 11 9 7 21 21 H 1.10518 * 109.26915 * 37.99553 * 11 9 7 22 22 H 1.11354 * 106.68566 * 158.88984 * 12 11 9 23 23 H 1.08702 * 110.33193 * 43.46333 * 13 12 11 24 24 H 1.09830 * 108.50097 * 161.02461 * 13 12 11 25 25 H 1.09519 * 108.76962 * 242.74031 * 14 13 12 26 26 H 1.08622 * 110.33528 * 123.90484 * 14 13 12 27 27 H 1.08775 * 109.13152 * 306.52332 * 16 15 14 28 28 H 1.08716 * 109.23450 * 186.52573 * 16 15 14 29 29 H 1.08997 * 109.09373 * 206.03859 * 17 12 11 30 30 H 1.09028 * 109.07736 * 324.94033 * 17 12 11 31 31 H 1.10170 * 108.03005 * 80.88127 * 18 15 14 32 32 H 1.10201 * 108.00306 * 194.71366 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2526 -2.4967 0.0017 10 1 0.6994 -2.5184 0.9797 11 6 2.1817 -3.7129 0.0015 12 6 2.6642 -4.1151 -1.3822 13 6 3.0664 -2.9251 -2.2343 14 6 1.8605 -2.2237 -2.8465 15 7 0.6277 -2.8763 -2.3995 16 6 0.5922 -4.2573 -2.8075 17 6 1.6812 -5.0403 -2.0834 18 6 0.2031 -2.5589 -1.0738 19 1 -0.4850 0.8400 0.0004 20 1 1.6638 -4.5692 0.4692 21 1 3.0569 -3.5033 0.6430 22 1 3.5904 -4.7157 -1.2358 23 1 3.6502 -2.2205 -1.6475 24 1 3.7052 -3.2827 -3.0531 25 1 1.9266 -2.2965 -3.9372 26 1 1.8554 -1.1727 -2.5719 27 1 0.7588 -4.3164 -3.8808 28 1 -0.3799 -4.6782 -2.5628 29 1 2.2207 -5.6519 -2.8065 30 1 1.2169 -5.6932 -1.3439 31 1 -0.3199 -1.5899 -1.1060 32 1 -0.5577 -3.2976 -0.7738 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259720179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:46 Heat of formation + Delta-G solvation = -5.172028 kcal Electronic energy + Delta-G solvation = -13503.357387 eV Core-core repulsion = 11463.095194 eV Total energy + Delta-G solvation = -2040.262193 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42851 -33.63641 -32.58354 -30.60577 -30.22552 -25.67010 -24.29610 -22.75789 -22.32390 -18.66984 -17.36857 -16.48681 -15.34568 -14.77827 -14.48293 -13.95297 -12.77059 -12.56443 -12.31314 -12.02539 -11.82577 -11.47294 -11.33604 -11.00420 -10.82998 -10.53553 -10.32160 -10.15355 -9.69804 -9.53496 -9.21924 -9.03299 -8.60479 -8.21329 -6.81168 -5.88292 -3.97655 3.30621 3.39441 3.42213 4.45070 5.12155 5.32208 5.36724 5.50142 5.57897 5.92169 6.08483 6.13441 6.21473 6.32272 6.42986 6.46347 6.55110 6.65948 6.73936 6.85282 6.98792 7.02393 7.19658 7.22249 7.48429 7.65634 7.81124 8.23218 8.39611 8.62201 8.85455 9.08161 9.62953 11.09084 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.049625 B = 0.014469 C = 0.014087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.100891 B = 1934.664525 C = 1987.239759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.490 4.490 8 H 0.054 0.946 9 C 0.025 3.975 10 H 0.011 0.989 11 C -0.096 4.096 12 C -0.066 4.066 13 C -0.127 4.127 14 C 0.096 3.904 15 N -0.574 5.574 16 C 0.086 3.914 17 C -0.147 4.147 18 C 0.082 3.918 19 H 0.260 0.740 20 H 0.028 0.972 21 H 0.042 0.958 22 H 0.034 0.966 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -5.704 -4.237 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.528 4.528 8 H 0.072 0.928 9 C 0.005 3.995 10 H 0.029 0.971 11 C -0.133 4.133 12 C -0.085 4.085 13 C -0.167 4.167 14 C -0.031 4.031 15 N -0.296 5.296 16 C -0.043 4.043 17 C -0.187 4.187 18 C -0.045 4.045 19 H 0.070 0.930 20 H 0.047 0.953 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.187 -5.410 -4.399 7.307 hybrid contribution 1.122 0.369 0.568 1.311 sum 3.310 -5.041 -3.831 7.144 Atomic orbital electron populations 1.69661 1.05780 1.26047 1.51337 1.24906 0.94785 0.98822 0.95643 0.86613 0.80097 0.84201 0.77586 1.19920 1.20989 1.21192 1.21079 0.92658 0.90179 1.48905 0.92825 1.19006 0.93413 0.91573 0.95509 0.97069 1.21790 0.99450 0.98305 0.93798 1.20432 0.96660 0.95528 0.95900 1.21643 0.99225 0.97605 0.98188 1.21375 0.86359 0.99508 0.95895 1.56383 1.34993 1.12038 1.26166 1.21170 0.96831 0.88372 0.97968 1.22071 0.98496 0.98474 0.99621 1.21126 0.96195 1.03314 0.83828 0.92996 0.95315 0.93940 0.94760 0.91001 0.95039 0.94201 0.89854 0.92472 0.92402 0.93430 0.92940 0.86119 0.97025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 10.77 55.43 0.60 -24.24 16 2 C 0.06 1.57 5.27 -17.82 -0.09 1.48 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.49 -13.00 5.99 -34.58 -0.21 -13.21 16 8 H 0.05 1.43 6.84 -52.49 -0.36 1.07 16 9 C 0.02 0.62 1.83 -93.18 -0.17 0.45 16 10 H 0.01 0.31 8.33 -49.95 -0.42 -0.10 16 11 C -0.10 -2.08 4.95 -27.23 -0.13 -2.21 16 12 C -0.07 -1.28 2.32 -92.21 -0.21 -1.50 16 13 C -0.13 -2.51 4.89 -27.68 -0.14 -2.65 16 14 C 0.10 2.01 5.39 -4.39 -0.02 1.99 16 15 N -0.57 -12.42 4.11 -242.21 -1.00 -13.41 16 16 C 0.09 1.56 5.92 -5.64 -0.03 1.53 16 17 C -0.15 -2.56 5.67 -27.48 -0.16 -2.72 16 18 C 0.08 2.00 4.89 -7.30 -0.04 1.96 16 19 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 20 H 0.03 0.58 7.78 -51.09 -0.40 0.19 16 21 H 0.04 0.92 8.16 -51.06 -0.42 0.50 16 22 H 0.03 0.62 8.26 -50.57 -0.42 0.20 16 23 H 0.07 1.52 6.47 -52.10 -0.34 1.19 16 24 H 0.03 0.54 8.21 -51.46 -0.42 0.12 16 25 H 0.04 0.74 8.12 -51.64 -0.42 0.32 16 26 H 0.08 1.95 7.13 -52.14 -0.37 1.58 16 27 H 0.06 0.94 8.03 -52.06 -0.42 0.52 16 28 H 0.06 1.01 7.95 -52.09 -0.41 0.60 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.89 7.65 -51.91 -0.40 0.49 16 31 H 0.12 3.33 5.22 -51.26 -0.27 3.07 16 32 H 0.01 0.27 7.88 -51.24 -0.40 -0.13 16 LS Contribution 235.33 15.07 3.55 3.55 Total: -1.00 -27.09 235.33 -8.09 -35.18 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.01 Total: -2.17 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.20 Total: -14.88 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.40 Total: -37.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.09 -8.09 -35.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.010 kcal (2) G-P(sol) polarization free energy of solvation -27.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds