Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99643 * 2 1 4 4 H 1.48497 * 109.46844 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46930 * 299.99896 * 3 2 1 6 6 H 1.48494 * 109.47442 * 59.99883 * 3 2 1 7 7 C 1.37875 * 120.00606 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50421 * 119.99736 * 359.97438 * 7 2 1 10 10 H 1.12383 * 105.27648 * 295.58941 * 9 7 2 11 11 C 1.53045 * 112.62715 * 179.97438 * 9 7 2 12 12 C 1.51970 * 113.77783 * 275.80077 * 11 9 7 13 13 C 1.51784 * 112.81707 * 42.84517 * 12 11 9 14 14 C 1.52354 * 112.13245 * 280.35170 * 13 12 11 15 15 N 1.46471 * 109.78588 * 1.89486 * 14 13 12 16 16 C 1.44052 * 111.18965 * 299.38051 * 15 14 13 17 17 C 1.52116 * 112.05084 * 274.07800 * 12 11 9 18 18 C 1.42778 * 115.75834 * 77.56170 * 15 14 13 19 19 H 0.96994 * 120.00182 * 359.97438 * 1 2 3 20 20 H 1.10462 * 109.35296 * 153.38851 * 11 9 7 21 21 H 1.10518 * 109.26915 * 37.99553 * 11 9 7 22 22 H 1.11354 * 106.68566 * 158.88984 * 12 11 9 23 23 H 1.08702 * 110.33193 * 43.46333 * 13 12 11 24 24 H 1.09830 * 108.50097 * 161.02461 * 13 12 11 25 25 H 1.09519 * 108.76962 * 242.74031 * 14 13 12 26 26 H 1.08622 * 110.33528 * 123.90484 * 14 13 12 27 27 H 1.08775 * 109.13152 * 306.52332 * 16 15 14 28 28 H 1.08716 * 109.23450 * 186.52573 * 16 15 14 29 29 H 1.08997 * 109.09373 * 206.03859 * 17 12 11 30 30 H 1.09028 * 109.07736 * 324.94033 * 17 12 11 31 31 H 1.10170 * 108.03005 * 80.88127 * 18 15 14 32 32 H 1.10201 * 108.00306 * 194.71366 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2526 -2.4967 0.0017 10 1 0.6994 -2.5184 0.9797 11 6 2.1817 -3.7129 0.0015 12 6 2.6642 -4.1151 -1.3822 13 6 3.0664 -2.9251 -2.2343 14 6 1.8605 -2.2237 -2.8465 15 7 0.6277 -2.8763 -2.3995 16 6 0.5922 -4.2573 -2.8075 17 6 1.6812 -5.0403 -2.0834 18 6 0.2031 -2.5589 -1.0738 19 1 -0.4850 0.8400 0.0004 20 1 1.6638 -4.5692 0.4692 21 1 3.0569 -3.5033 0.6430 22 1 3.5904 -4.7157 -1.2358 23 1 3.6502 -2.2205 -1.6475 24 1 3.7052 -3.2827 -3.0531 25 1 1.9266 -2.2965 -3.9372 26 1 1.8554 -1.1727 -2.5719 27 1 0.7588 -4.3164 -3.8808 28 1 -0.3799 -4.6782 -2.5628 29 1 2.2207 -5.6519 -2.8065 30 1 1.2169 -5.6932 -1.3439 31 1 -0.3199 -1.5899 -1.1060 32 1 -0.5577 -3.2976 -0.7738 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259720179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = -21.301908 kcal Electronic energy + Delta-G solvation = -13504.056831 eV Core-core repulsion = 11463.095194 eV Total energy + Delta-G solvation = -2040.961637 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.07567 -35.59023 -34.23451 -32.53679 -31.75242 -27.62645 -26.03943 -24.56391 -23.83248 -20.51839 -18.99229 -18.41511 -16.96566 -16.58241 -16.29702 -15.61206 -14.52955 -14.41302 -13.96024 -13.66798 -13.52709 -13.16692 -12.94286 -12.81346 -12.66539 -12.47348 -12.12786 -11.91261 -11.34622 -11.07158 -10.88302 -10.86416 -10.58649 -10.27129 -8.52180 -7.94463 -6.11865 1.40476 1.43578 1.53170 2.45238 3.22251 3.48422 3.89670 3.98474 4.05548 4.48889 4.54394 4.59665 4.64068 4.70114 4.76505 4.85122 5.03036 5.07211 5.09253 5.21944 5.31866 5.42922 5.48727 5.55433 5.66472 5.72972 5.75492 6.24978 6.43261 6.74177 7.01582 7.15506 7.51472 9.00207 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.049625 B = 0.014469 C = 0.014087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.100891 B = 1934.664525 C = 1987.239759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.028 3.972 10 H -0.033 1.033 11 C -0.094 4.094 12 C -0.070 4.070 13 C -0.126 4.126 14 C 0.095 3.905 15 N -0.585 5.585 16 C 0.081 3.919 17 C -0.142 4.142 18 C 0.098 3.902 19 H 0.259 0.741 20 H 0.037 0.963 21 H 0.035 0.965 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -6.809 -5.698 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.008 3.992 10 H -0.015 1.015 11 C -0.132 4.132 12 C -0.089 4.089 13 C -0.165 4.165 14 C -0.032 4.032 15 N -0.307 5.307 16 C -0.047 4.047 17 C -0.181 4.181 18 C -0.030 4.030 19 H 0.069 0.931 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.442 -6.530 -5.866 9.429 hybrid contribution 0.713 0.701 1.026 1.432 sum 4.155 -5.829 -4.840 8.641 Atomic orbital electron populations 1.69837 1.07041 1.26609 1.51948 1.25594 0.95476 1.01858 0.95422 0.85682 0.79166 0.80458 0.77443 1.19245 1.20639 1.21125 1.21229 0.92431 0.91092 1.48681 0.93273 1.19017 0.93801 0.92837 0.93568 1.01548 1.21739 0.98433 0.96961 0.96069 1.20448 0.98196 0.96037 0.94249 1.21583 0.98761 0.97241 0.98911 1.21364 0.86689 0.97626 0.97564 1.56274 1.35718 1.14610 1.24115 1.21330 0.97628 0.86193 0.99510 1.22007 0.97890 0.98060 1.00155 1.20741 0.95656 1.01316 0.85315 0.93131 0.94473 0.94659 0.92509 0.93244 0.91752 0.91335 0.93457 0.89874 0.92073 0.90188 0.92670 0.89692 0.97532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.70 10.77 21.45 0.23 -52.47 16 2 C 0.01 0.77 5.27 84.65 0.45 1.22 16 3 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.50 -26.90 5.99 25.51 0.15 -26.74 16 8 H 0.05 2.66 6.84 -2.91 -0.02 2.64 16 9 C 0.03 1.42 1.83 -12.45 -0.02 1.39 16 10 H -0.03 -1.95 8.33 -0.53 0.00 -1.96 16 11 C -0.09 -4.03 4.95 30.27 0.15 -3.88 16 12 C -0.07 -2.52 2.32 -11.82 -0.03 -2.54 16 13 C -0.13 -4.63 4.89 29.98 0.15 -4.49 16 14 C 0.10 3.81 5.39 86.17 0.46 4.28 16 15 N -0.59 -24.58 4.11 -920.22 -3.78 -28.36 16 16 C 0.08 2.70 5.92 86.64 0.51 3.21 16 17 C -0.14 -4.36 5.67 30.11 0.17 -4.18 16 18 C 0.10 4.84 4.89 86.22 0.42 5.26 16 19 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 20 H 0.04 1.49 7.78 -1.60 -0.01 1.47 16 21 H 0.03 1.51 8.16 -1.57 -0.01 1.50 16 22 H 0.06 1.81 8.26 -1.11 -0.01 1.80 16 23 H 0.05 2.03 6.47 -2.54 -0.02 2.01 16 24 H 0.06 1.96 8.21 -1.94 -0.02 1.94 16 25 H 0.07 2.34 8.12 -2.11 -0.02 2.32 16 26 H 0.05 2.22 7.13 -2.59 -0.02 2.20 16 27 H 0.08 2.35 8.03 -2.51 -0.02 2.33 16 28 H 0.06 1.98 7.95 -2.54 -0.02 1.96 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.67 7.65 -2.37 -0.02 1.66 16 31 H 0.09 4.87 5.22 -1.76 -0.01 4.86 16 32 H 0.01 0.30 7.88 -1.74 -0.01 0.29 16 Total: -1.00 -58.79 235.33 2.01 -56.78 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.12 Total: 4.85 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 2.41 Total: -26.48 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.55 Total: -80.83 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -58.79 2.01 -56.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.478 kcal (2) G-P(sol) polarization free energy of solvation -58.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds