Wall clock time and date at job start Mon Mar 30 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.62399 * 300.69282 * 9 7 2 11 11 C 1.55132 * 110.70893 * 63.80314 * 9 7 2 12 12 C 1.55118 * 101.56332 * 153.90773 * 11 9 7 13 13 N 1.47842 * 104.89905 * 323.15868 * 12 11 9 14 14 C 1.46909 * 110.99771 * 146.23898 * 13 12 11 15 15 C 1.52996 * 109.46971 * 69.15470 * 14 13 12 16 16 C 1.53004 * 117.50087 * 243.74863 * 15 14 13 17 17 C 1.53003 * 117.50021 * 175.08619 * 15 14 13 18 18 C 1.47435 * 108.57366 * 23.97377 * 13 12 11 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09003 * 110.98955 * 272.12721 * 11 9 7 21 21 H 1.08997 * 110.99055 * 35.94443 * 11 9 7 22 22 H 1.08993 * 110.42497 * 204.23975 * 12 11 9 23 23 H 1.09004 * 110.30666 * 82.01555 * 12 11 9 24 24 H 1.09002 * 109.46890 * 189.15064 * 14 13 12 25 25 H 1.08996 * 109.47126 * 309.15631 * 14 13 12 26 26 H 1.08998 * 115.55476 * 29.41607 * 15 14 13 27 27 H 1.09004 * 117.49708 * 359.97438 * 16 15 14 28 28 H 1.08997 * 117.50656 * 145.01982 * 16 15 14 29 29 H 1.08996 * 117.50171 * 214.97629 * 17 15 14 30 30 H 1.09006 * 117.49383 * 359.97438 * 17 15 14 31 31 H 1.09002 * 109.88876 * 239.60629 * 18 13 12 32 32 H 1.08997 * 109.89365 * 118.41338 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6078 -2.5711 0.8776 11 6 0.4225 -2.6542 -1.3018 12 6 0.3221 -4.1973 -1.4245 13 7 1.6289 -4.7021 -0.9522 14 6 1.4777 -5.9908 -0.2632 15 6 1.0924 -7.0692 -1.2778 16 6 -0.2753 -7.7356 -1.1154 17 6 0.9997 -8.5113 -0.7750 18 6 2.2274 -3.6928 -0.0594 19 1 -0.4850 -0.8401 -0.0004 20 1 -0.5639 -2.2034 -1.1930 21 1 0.9523 -2.2297 -2.1545 22 1 0.1561 -4.4863 -2.4622 23 1 -0.4817 -4.5755 -0.7927 24 1 2.4200 -6.2606 0.2136 25 1 0.6978 -5.9088 0.4937 26 1 1.4585 -6.9126 -2.2924 27 1 -0.9004 -7.4059 -0.2855 28 1 -0.8088 -8.0177 -2.0231 29 1 1.3045 -9.3034 -1.4590 30 1 1.2137 -8.6917 0.2785 31 1 3.1875 -3.3668 -0.4593 32 1 2.3616 -4.1125 0.9375 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259874235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:59 Heat of formation + Delta-G solvation = -1.373542 kcal Electronic energy + Delta-G solvation = -12404.478863 eV Core-core repulsion = 10364.381385 eV Total energy + Delta-G solvation = -2040.097478 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.15780 -37.93745 -35.26135 -31.97243 -30.12258 -27.24964 -25.76818 -23.24309 -22.19372 -21.67990 -21.16955 -19.03289 -17.32200 -16.52527 -15.69709 -15.66647 -15.26323 -14.89036 -14.43956 -14.04354 -13.47090 -13.23227 -12.86597 -12.65142 -12.38003 -12.29483 -12.08096 -11.94081 -11.67824 -11.58018 -11.15521 -10.82223 -10.58894 -10.48764 -9.27859 -8.59915 -6.33138 1.53873 1.61677 1.80910 2.57868 2.84117 3.07479 3.19176 3.81945 3.95296 3.99011 4.09860 4.19017 4.32063 4.40250 4.43759 4.64123 4.73437 4.75077 4.77210 4.81760 5.01241 5.03307 5.16958 5.25168 5.31408 5.33350 5.48431 5.99716 6.09500 6.19331 6.24115 6.64160 7.46973 8.78502 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.092622 B = 0.007612 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.232626 B = 3677.598505 C = 3836.533753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.030 4.030 3 Si 1.115 2.885 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.606 4.606 8 H 0.047 0.953 9 C 0.007 3.993 10 H -0.007 1.007 11 C -0.114 4.114 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.081 3.919 15 C -0.156 4.156 16 C -0.183 4.183 17 C -0.163 4.163 18 C 0.065 3.935 19 H 0.261 0.739 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.026 0.974 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.443 -12.983 -1.842 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.229 4.229 3 Si 0.936 3.064 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.644 4.644 8 H 0.066 0.934 9 C -0.012 4.012 10 H 0.011 0.989 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.257 5.257 14 C -0.046 4.046 15 C -0.175 4.175 16 C -0.220 4.220 17 C -0.200 4.200 18 C -0.062 4.062 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.044 0.956 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.584 -11.457 -2.254 11.784 hybrid contribution -0.567 -1.325 0.825 1.661 sum 1.017 -12.782 -1.429 12.902 Atomic orbital electron populations 1.70916 1.07814 1.30440 1.48405 1.27239 0.96641 1.06297 0.92674 0.82961 0.74134 0.71430 0.77835 1.20997 1.19699 1.19640 1.22281 0.94151 0.92690 1.55327 0.93445 1.19984 0.93966 0.94629 0.92656 0.98907 1.22717 0.98886 0.94598 0.99047 1.22961 0.89856 0.93776 1.00329 1.63578 1.22176 1.02972 1.36973 1.21897 1.00167 0.88520 0.94064 1.22173 1.01649 0.93390 1.00285 1.23108 0.90788 1.04596 1.03538 1.23040 1.00897 0.93506 1.02549 1.22648 0.98305 0.91300 0.93978 0.92808 0.93655 0.93571 0.89920 0.94193 0.90381 0.95605 0.87709 0.89518 0.87858 0.87168 0.88383 0.91975 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.45 21.45 0.29 -57.27 16 2 C -0.03 -1.75 5.34 84.65 0.45 -1.29 16 3 Si 1.11 50.64 29.90 68.60 2.05 52.69 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.61 -34.74 8.48 25.60 0.22 -34.52 16 8 H 0.05 2.68 7.55 -2.91 -0.02 2.66 16 9 C 0.01 0.36 2.45 -10.36 -0.03 0.34 16 10 H -0.01 -0.40 8.00 -2.38 -0.02 -0.42 16 11 C -0.11 -5.45 5.78 32.05 0.19 -5.27 16 12 C 0.06 2.25 6.19 86.85 0.54 2.79 16 13 N -0.53 -20.22 5.16 -885.10 -4.57 -24.79 16 14 C 0.08 2.50 4.85 86.30 0.42 2.92 16 15 C -0.16 -3.94 5.42 -10.79 -0.06 -3.99 16 16 C -0.18 -3.94 10.18 30.62 0.31 -3.63 16 17 C -0.16 -3.13 10.26 30.62 0.31 -2.82 16 18 C 0.07 2.85 6.45 86.65 0.56 3.41 16 19 H 0.26 16.04 5.44 -92.71 -0.50 15.54 16 20 H 0.04 2.27 6.60 -2.39 -0.02 2.26 16 21 H 0.05 2.34 8.04 -2.39 -0.02 2.32 16 22 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 23 H 0.04 1.48 7.62 -2.38 -0.02 1.46 16 24 H 0.08 2.26 8.03 -2.39 -0.02 2.24 16 25 H 0.03 0.82 7.58 -2.39 -0.02 0.80 16 26 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.09 1.94 8.03 -2.38 -0.02 1.92 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.06 2.82 7.64 -2.39 -0.02 2.80 16 32 H 0.04 1.78 7.55 -2.39 -0.02 1.76 16 Total: -1.00 -62.88 258.05 2.01 -60.86 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.33 Total: 10.57 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 2.91 Total: -42.07 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -4.28 Total: -82.05 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -62.88 2.01 -60.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.489 kcal (2) G-P(sol) polarization free energy of solvation -62.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds