Wall clock time and date at job start Mon Mar 30 2020 02:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35024 * 1 3 3 C 1.40078 * 119.99985 * 2 1 4 4 H 1.07994 * 119.99695 * 155.13375 * 3 2 1 5 5 C 1.40302 * 119.99877 * 335.13368 * 3 2 1 6 6 N 1.30690 * 120.00500 * 342.68408 * 5 3 2 7 7 Si 1.86807 * 120.00036 * 162.68039 * 5 3 2 8 8 H 1.48500 * 109.46680 * 89.99898 * 7 5 3 9 9 H 1.48501 * 109.47114 * 210.00021 * 7 5 3 10 10 H 1.48499 * 109.47014 * 330.00285 * 7 5 3 11 11 C 1.50699 * 120.00111 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.47022 * 94.99823 * 11 2 1 13 13 H 1.08993 * 109.53467 * 305.09710 * 12 11 2 14 14 C 1.53117 * 109.50208 * 184.99879 * 12 11 2 15 15 C 1.53114 * 109.16177 * 182.40392 * 14 12 11 16 16 C 1.53039 * 109.27567 * 57.65490 * 15 14 12 17 17 N 1.46846 * 109.52553 * 300.81881 * 16 15 14 18 18 C 1.46850 * 111.19315 * 61.74436 * 17 16 15 19 19 H 1.08006 * 120.00647 * 354.27484 * 1 2 3 20 20 H 1.08003 * 120.00229 * 174.27882 * 1 2 3 21 21 H 0.96993 * 120.00428 * 180.02562 * 6 5 3 22 22 H 1.08996 * 109.47501 * 334.99796 * 11 2 1 23 23 H 1.08998 * 109.47282 * 214.99537 * 11 2 1 24 24 H 1.08999 * 109.52380 * 302.31177 * 14 12 11 25 25 H 1.09002 * 109.52082 * 62.50190 * 14 12 11 26 26 H 1.09001 * 109.50768 * 177.59649 * 15 14 12 27 27 H 1.09003 * 109.50602 * 297.71792 * 15 14 12 28 28 H 1.09007 * 109.45913 * 180.80435 * 16 15 14 29 29 H 1.09003 * 109.45960 * 60.84152 * 16 15 14 30 30 H 1.00894 * 110.99988 * 185.83743 * 17 16 15 31 31 H 1.09001 * 109.45948 * 178.23977 * 18 17 16 32 32 H 1.09002 * 109.46278 * 58.27850 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3502 0.0000 0.0000 3 6 2.0506 1.2131 0.0000 4 1 3.0555 1.2564 0.3933 5 6 1.4466 2.3718 -0.5109 6 7 0.3956 2.2755 -1.2817 7 14 2.1447 4.0525 -0.0894 8 1 3.1606 4.4348 -1.1028 9 1 1.0498 5.0558 -0.0830 10 1 2.7785 4.0029 1.2526 11 6 2.1038 -1.3051 -0.0006 12 6 2.4676 -1.6833 -1.4378 13 1 1.5657 -1.7011 -2.0495 14 6 3.1223 -3.0673 -1.4521 15 6 3.5374 -3.4122 -2.8850 16 6 4.4876 -2.3331 -3.4093 17 7 3.8146 -1.0284 -3.3762 18 6 3.4488 -0.6543 -2.0041 19 1 -0.5401 0.9306 0.0933 20 1 -0.5401 -0.9307 -0.0932 21 1 -0.0217 3.0765 -1.6352 22 1 1.4789 -2.0856 0.4334 23 1 3.0145 -1.1991 0.5888 24 1 4.0027 -3.0605 -0.8094 25 1 2.4116 -3.8102 -1.0900 26 1 4.0426 -4.3780 -2.8951 27 1 2.6523 -3.4571 -3.5195 28 1 4.7738 -2.5683 -4.4345 29 1 5.3787 -2.2982 -2.7825 30 1 4.3859 -0.3159 -3.8051 31 1 2.9805 0.3299 -2.0086 32 1 4.3448 -0.6272 -1.3839 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:11 Heat of formation + Delta-G solvation = -6.188328 kcal Electronic energy + Delta-G solvation = -12675.835637 eV Core-core repulsion = 10635.529373 eV Total energy + Delta-G solvation = -2040.306263 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.27916 -34.98029 -32.56128 -31.21871 -29.46623 -25.49737 -24.56622 -23.04997 -21.34668 -19.18002 -18.46825 -15.95232 -15.51142 -14.86019 -14.19663 -13.98638 -13.28448 -13.19300 -12.68016 -12.49301 -11.97813 -11.66430 -11.31571 -11.07225 -10.85407 -10.57550 -10.32960 -10.16656 -9.87560 -9.67810 -9.37600 -9.06151 -8.74763 -7.90988 -7.11928 -6.34275 -3.97611 3.12489 3.24157 3.28975 4.16866 4.26544 4.73558 5.23487 5.33047 5.41215 5.55168 5.75627 5.88094 6.01625 6.13272 6.20548 6.36122 6.42826 6.49557 6.64101 6.75619 6.85222 7.10435 7.24516 7.32454 7.45706 7.64799 7.74579 7.91294 8.29873 8.57767 9.09519 9.36517 9.58411 10.64550 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043785 B = 0.011117 C = 0.009802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.332774 B = 2517.994286 C = 2855.869015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 C 0.032 3.968 3 C -0.471 4.471 4 H 0.058 0.942 5 C 0.077 3.923 6 N -0.799 5.799 7 Si 0.887 3.113 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.266 1.266 11 C -0.073 4.073 12 C -0.066 4.066 13 H 0.073 0.927 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.058 3.942 17 N -0.692 5.692 18 C 0.064 3.936 19 H 0.087 0.913 20 H 0.037 0.963 21 H 0.269 0.731 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.335 0.665 31 H 0.109 0.891 32 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -5.724 -2.678 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.387 4.387 2 C 0.030 3.970 3 C -0.503 4.503 4 H 0.076 0.924 5 C -0.137 4.137 6 N -0.426 5.426 7 Si 0.713 3.287 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.191 1.191 11 C -0.111 4.111 12 C -0.084 4.084 13 H 0.091 0.909 14 C -0.156 4.156 15 C -0.153 4.153 16 C -0.071 4.071 17 N -0.323 5.323 18 C -0.064 4.064 19 H 0.105 0.895 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.152 0.848 31 H 0.127 0.873 32 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.952 -5.860 -2.959 8.861 hybrid contribution 1.172 1.112 0.458 1.679 sum 7.124 -4.748 -2.501 8.919 Atomic orbital electron populations 1.23296 0.94702 0.97341 1.23343 1.18327 0.93151 0.90868 0.94636 1.18996 1.00505 0.93038 1.37782 0.92386 1.25698 0.94648 1.00080 0.93314 1.69842 1.18995 1.29817 1.23982 0.86688 0.79182 0.83089 0.79787 1.20123 1.20621 1.19057 1.20662 0.98701 0.97410 0.94360 1.20986 0.98277 0.92174 0.97010 0.90902 1.21715 0.99958 0.98184 0.95780 1.21562 0.99652 0.96817 0.97298 1.21875 0.94736 0.91113 0.99420 1.60323 1.47168 1.03548 1.21238 1.22168 0.96812 1.01567 0.85820 0.89469 0.94412 0.91995 0.93825 0.93700 0.92961 0.92498 0.92569 0.91432 0.91853 0.96093 0.84779 0.87330 0.96561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -9.71 12.92 29.59 0.38 -9.33 16 2 C 0.03 0.84 4.66 -105.07 -0.49 0.35 16 3 C -0.47 -12.80 6.93 -38.12 -0.26 -13.07 16 4 H 0.06 1.53 7.91 -52.49 -0.42 1.12 16 5 C 0.08 2.07 5.09 -17.26 -0.09 1.99 16 6 N -0.80 -22.35 11.03 55.57 0.61 -21.74 16 7 Si 0.89 20.03 29.60 -169.99 -5.03 15.00 16 8 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C -0.07 -1.64 4.86 -27.88 -0.14 -1.77 16 12 C -0.07 -1.34 2.34 -90.54 -0.21 -1.55 16 13 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 14 C -0.12 -1.97 5.29 -26.61 -0.14 -2.12 16 15 C -0.12 -1.71 6.09 -26.65 -0.16 -1.87 16 16 C 0.06 0.87 6.55 -3.83 -0.03 0.84 16 17 N -0.69 -12.19 6.85 -113.81 -0.78 -12.97 16 18 C 0.06 1.31 5.35 -3.83 -0.02 1.29 16 19 H 0.09 2.62 6.25 -52.48 -0.33 2.29 16 20 H 0.04 1.01 8.06 -52.48 -0.42 0.58 16 21 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 22 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 23 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.34 5.28 8.90 -39.29 -0.35 4.93 16 31 H 0.11 2.61 6.07 -51.93 -0.32 2.30 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 255.64 15.07 3.85 3.85 Total: -1.00 -28.42 255.64 -7.69 -36.11 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.19 Total: 4.99 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -1.15 Total: -25.24 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.17 Total: -34.71 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.42 -7.69 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.921 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds