Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35039 * 1 3 3 C 1.40067 * 119.99683 * 2 1 4 4 H 1.08009 * 119.99565 * 153.54080 * 3 2 1 5 5 C 1.40307 * 120.00685 * 333.54138 * 3 2 1 6 6 N 1.30690 * 119.99471 * 344.99897 * 5 3 2 7 7 Si 1.86793 * 120.00286 * 164.99718 * 5 3 2 8 8 H 1.48508 * 109.47144 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47191 * 300.00016 * 7 5 3 10 10 H 1.48505 * 109.47236 * 60.00239 * 7 5 3 11 11 C 1.50700 * 119.99836 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47365 * 95.00211 * 11 2 1 13 13 H 1.09000 * 109.50739 * 55.07372 * 12 11 2 14 14 C 1.53118 * 109.50440 * 175.19668 * 12 11 2 15 15 C 1.53124 * 109.15982 * 177.59350 * 14 12 11 16 16 C 1.53031 * 109.27671 * 302.34217 * 15 14 12 17 17 N 1.46839 * 109.52441 * 59.18251 * 16 15 14 18 18 C 1.46851 * 111.19983 * 298.25368 * 17 16 15 19 19 H 1.07994 * 119.99888 * 174.61908 * 1 2 3 20 20 H 1.07995 * 119.99996 * 354.62549 * 1 2 3 21 21 H 0.97008 * 120.00103 * 179.97438 * 6 5 3 22 22 H 1.09000 * 109.46727 * 215.00001 * 11 2 1 23 23 H 1.09000 * 109.46787 * 334.99682 * 11 2 1 24 24 H 1.08996 * 109.52364 * 297.49338 * 14 12 11 25 25 H 1.09000 * 109.52326 * 57.68926 * 14 12 11 26 26 H 1.09003 * 109.49826 * 182.40140 * 15 14 12 27 27 H 1.08996 * 109.53459 * 62.30562 * 15 14 12 28 28 H 1.09002 * 109.46748 * 299.16424 * 16 15 14 29 29 H 1.09004 * 109.46159 * 179.19589 * 16 15 14 30 30 H 1.00903 * 111.00259 * 62.35547 * 17 16 15 31 31 H 1.08993 * 109.46100 * 301.72901 * 18 17 16 32 32 H 1.09000 * 109.45642 * 181.75243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0459 1.2620 0.4168 5 6 1.4594 2.3646 -0.5414 6 7 0.3999 2.2603 -1.2993 7 14 2.1866 4.0465 -0.1787 8 1 1.3829 5.0913 -0.8629 9 1 2.1677 4.2885 1.2863 10 1 3.5868 4.0971 -0.6708 11 6 2.1039 -1.3051 -0.0006 12 6 2.4678 -1.6833 -1.4376 13 1 3.0186 -0.8648 -1.9010 14 6 3.3354 -2.9449 -1.4302 15 6 3.6449 -3.3506 -2.8739 16 6 2.3323 -3.5730 -3.6286 17 7 1.5388 -2.3376 -3.6078 18 6 1.1892 -1.9541 -2.2340 19 1 -0.5400 -0.9311 -0.0877 20 1 -0.5400 0.9312 0.0876 21 1 -0.0092 3.0564 -1.6734 22 1 3.0145 -1.1991 0.5889 23 1 1.4789 -2.0856 0.4334 24 1 4.2667 -2.7434 -0.9009 25 1 2.7994 -3.7527 -0.9318 26 1 4.2267 -4.2724 -2.8761 27 1 4.2149 -2.5593 -3.3606 28 1 1.7693 -4.3743 -3.1499 29 1 2.5490 -3.8481 -4.6608 30 1 2.0229 -1.5889 -4.0802 31 1 0.6317 -2.7629 -1.7619 32 1 0.5759 -1.0533 -2.2535 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = -9.245422 kcal Electronic energy + Delta-G solvation = -12634.887627 eV Core-core repulsion = 10594.448799 eV Total energy + Delta-G solvation = -2040.438829 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.53047 -35.00471 -32.50788 -31.12115 -29.46492 -25.31783 -24.85092 -23.00202 -21.34053 -19.54729 -18.75286 -15.52575 -15.42828 -14.85246 -14.57622 -14.24345 -13.39052 -13.28544 -12.56679 -12.02742 -11.73424 -11.63448 -11.55415 -10.96551 -10.87659 -10.84545 -10.57078 -10.28093 -10.15400 -9.88609 -9.41305 -9.10931 -8.80975 -7.84610 -7.10143 -6.34258 -4.01188 3.14456 3.22584 3.26229 4.15336 4.25272 4.81386 5.11135 5.31037 5.32435 5.50570 5.64286 5.85621 5.90040 6.05253 6.12065 6.27309 6.35292 6.41891 6.56796 6.67796 6.87811 7.04502 7.15379 7.16076 7.44545 7.56284 7.71512 7.86973 8.28571 8.56866 9.08216 9.34544 9.56064 10.64257 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.048413 B = 0.009752 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.218523 B = 2870.647542 C = 2886.815559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 C 0.030 3.970 3 C -0.475 4.475 4 H 0.057 0.943 5 C 0.076 3.924 6 N -0.804 5.804 7 Si 0.892 3.108 8 H -0.283 1.283 9 H -0.270 1.270 10 H -0.272 1.272 11 C -0.069 4.069 12 C -0.106 4.106 13 H 0.070 0.930 14 C -0.116 4.116 15 C -0.156 4.156 16 C 0.057 3.943 17 N -0.689 5.689 18 C 0.063 3.937 19 H 0.039 0.961 20 H 0.087 0.913 21 H 0.269 0.731 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.338 0.662 31 H 0.058 0.942 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -6.899 -2.992 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.381 4.381 2 C 0.029 3.971 3 C -0.507 4.507 4 H 0.075 0.925 5 C -0.138 4.138 6 N -0.432 5.432 7 Si 0.718 3.282 8 H -0.208 1.208 9 H -0.195 1.195 10 H -0.197 1.197 11 C -0.108 4.108 12 C -0.126 4.126 13 H 0.088 0.912 14 C -0.153 4.153 15 C -0.196 4.196 16 C -0.073 4.073 17 N -0.316 5.316 18 C -0.066 4.066 19 H 0.058 0.942 20 H 0.105 0.895 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.077 0.923 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.903 -7.101 -3.269 8.738 hybrid contribution 1.298 1.217 0.472 1.841 sum 5.202 -5.884 -2.797 8.337 Atomic orbital electron populations 1.23323 0.94571 0.97353 1.22865 1.18325 0.93177 0.90774 0.94847 1.19040 1.01429 0.93556 1.36683 0.92496 1.25690 0.94678 1.00089 0.93352 1.69816 1.19002 1.30059 1.24291 0.86665 0.79526 0.82607 0.79413 1.20807 1.19457 1.19694 1.20601 0.98771 0.97326 0.94065 1.21653 0.96973 0.95929 0.98061 0.91165 1.21676 0.99743 0.98368 0.95553 1.22266 0.98905 1.00980 0.97416 1.21987 0.92136 0.93965 0.99255 1.60746 1.46683 1.06324 1.17891 1.22181 0.96456 1.01893 0.86029 0.94226 0.89459 0.91965 0.93643 0.94032 0.92600 0.92561 0.92385 0.92291 0.91527 0.91661 0.84479 0.92325 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.29 11.58 29.60 0.34 -8.95 16 2 C 0.03 0.80 4.39 -105.07 -0.46 0.33 16 3 C -0.48 -13.15 9.04 -38.12 -0.34 -13.49 16 4 H 0.06 1.54 7.90 -52.48 -0.41 1.12 16 5 C 0.08 2.06 5.13 -17.26 -0.09 1.97 16 6 N -0.80 -22.38 10.99 55.57 0.61 -21.77 16 7 Si 0.89 20.24 29.59 -169.99 -5.03 15.21 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 11 C -0.07 -1.53 4.83 -27.89 -0.13 -1.66 16 12 C -0.11 -2.07 2.33 -90.54 -0.21 -2.28 16 13 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 14 C -0.12 -1.85 5.29 -26.61 -0.14 -1.99 16 15 C -0.16 -2.17 6.08 -26.65 -0.16 -2.33 16 16 C 0.06 0.81 6.55 -3.84 -0.03 0.78 16 17 N -0.69 -11.77 6.87 -113.82 -0.78 -12.55 16 18 C 0.06 1.25 5.45 -3.83 -0.02 1.22 16 19 H 0.04 1.02 8.06 -52.49 -0.42 0.60 16 20 H 0.09 2.58 6.27 -52.49 -0.33 2.26 16 21 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 22 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 23 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.34 5.66 8.86 -39.29 -0.35 5.31 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 2.33 6.57 -51.93 -0.34 1.99 16 LS Contribution 256.68 15.07 3.87 3.87 Total: -1.00 -27.87 256.68 -7.79 -35.65 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.21 Total: 5.99 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -1.25 Total: -26.40 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.17 Total: -34.32 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.87 -7.79 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.409 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds