Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35039 * 1 3 3 C 1.40067 * 119.99683 * 2 1 4 4 H 1.08009 * 119.99565 * 153.54080 * 3 2 1 5 5 C 1.40307 * 120.00685 * 333.54138 * 3 2 1 6 6 N 1.30690 * 119.99471 * 344.99897 * 5 3 2 7 7 Si 1.86793 * 120.00286 * 164.99718 * 5 3 2 8 8 H 1.48508 * 109.47144 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47191 * 300.00016 * 7 5 3 10 10 H 1.48505 * 109.47236 * 60.00239 * 7 5 3 11 11 C 1.50700 * 119.99836 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47365 * 95.00211 * 11 2 1 13 13 H 1.09000 * 109.50739 * 55.07372 * 12 11 2 14 14 C 1.53118 * 109.50440 * 175.19668 * 12 11 2 15 15 C 1.53124 * 109.15982 * 177.59350 * 14 12 11 16 16 C 1.53031 * 109.27671 * 302.34217 * 15 14 12 17 17 N 1.46839 * 109.52441 * 59.18251 * 16 15 14 18 18 C 1.46851 * 111.19983 * 298.25368 * 17 16 15 19 19 H 1.07994 * 119.99888 * 174.61908 * 1 2 3 20 20 H 1.07995 * 119.99996 * 354.62549 * 1 2 3 21 21 H 0.97008 * 120.00103 * 179.97438 * 6 5 3 22 22 H 1.09000 * 109.46727 * 215.00001 * 11 2 1 23 23 H 1.09000 * 109.46787 * 334.99682 * 11 2 1 24 24 H 1.08996 * 109.52364 * 297.49338 * 14 12 11 25 25 H 1.09000 * 109.52326 * 57.68926 * 14 12 11 26 26 H 1.09003 * 109.49826 * 182.40140 * 15 14 12 27 27 H 1.08996 * 109.53459 * 62.30562 * 15 14 12 28 28 H 1.09002 * 109.46748 * 299.16424 * 16 15 14 29 29 H 1.09004 * 109.46159 * 179.19589 * 16 15 14 30 30 H 1.00903 * 111.00259 * 62.35547 * 17 16 15 31 31 H 1.08993 * 109.46100 * 301.72901 * 18 17 16 32 32 H 1.09000 * 109.45642 * 181.75243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0459 1.2620 0.4168 5 6 1.4594 2.3646 -0.5414 6 7 0.3999 2.2603 -1.2993 7 14 2.1866 4.0465 -0.1787 8 1 1.3829 5.0913 -0.8629 9 1 2.1677 4.2885 1.2863 10 1 3.5868 4.0971 -0.6708 11 6 2.1039 -1.3051 -0.0006 12 6 2.4678 -1.6833 -1.4376 13 1 3.0186 -0.8648 -1.9010 14 6 3.3354 -2.9449 -1.4302 15 6 3.6449 -3.3506 -2.8739 16 6 2.3323 -3.5730 -3.6286 17 7 1.5388 -2.3376 -3.6078 18 6 1.1892 -1.9541 -2.2340 19 1 -0.5400 -0.9311 -0.0877 20 1 -0.5400 0.9312 0.0876 21 1 -0.0092 3.0564 -1.6734 22 1 3.0145 -1.1991 0.5889 23 1 1.4789 -2.0856 0.4334 24 1 4.2667 -2.7434 -0.9009 25 1 2.7994 -3.7527 -0.9318 26 1 4.2267 -4.2724 -2.8761 27 1 4.2149 -2.5593 -3.3606 28 1 1.7693 -4.3743 -3.1499 29 1 2.5490 -3.8481 -4.6608 30 1 2.0229 -1.5889 -4.0802 31 1 0.6317 -2.7629 -1.7619 32 1 0.5759 -1.0533 -2.2535 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = -26.704542 kcal Electronic energy + Delta-G solvation = -12635.644712 eV Core-core repulsion = 10594.448799 eV Total energy + Delta-G solvation = -2041.195913 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97187 -36.91483 -34.32221 -32.51535 -31.19491 -27.21911 -26.76544 -24.39793 -22.74335 -20.99891 -20.77931 -17.63829 -16.81976 -16.76647 -16.05679 -15.50870 -15.13442 -14.71943 -14.34159 -13.68225 -13.45870 -13.29370 -13.03623 -12.72989 -12.51675 -12.20105 -12.13909 -12.06764 -11.71775 -11.50626 -11.37027 -10.95436 -10.82532 -9.34300 -9.07691 -8.42022 -6.19287 1.32239 1.38105 1.47624 2.12854 2.29789 3.30942 3.49778 3.89976 4.02903 4.11992 4.21856 4.50475 4.60332 4.67088 4.78918 4.85259 5.04018 5.06645 5.08268 5.15983 5.25605 5.28832 5.31589 5.46197 5.53997 5.58885 6.11187 6.17758 6.36496 6.50511 6.94693 7.21016 7.47399 8.57347 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.048413 B = 0.009752 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.218523 B = 2870.647542 C = 2886.815559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.361 4.361 2 C 0.029 3.971 3 C -0.508 4.508 4 H 0.058 0.942 5 C 0.031 3.969 6 N -0.832 5.832 7 Si 0.966 3.034 8 H -0.274 1.274 9 H -0.266 1.266 10 H -0.261 1.261 11 C -0.067 4.067 12 C -0.097 4.097 13 H 0.044 0.956 14 C -0.110 4.110 15 C -0.150 4.150 16 C 0.055 3.945 17 N -0.694 5.694 18 C 0.076 3.924 19 H 0.046 0.954 20 H 0.058 0.942 21 H 0.275 0.725 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.338 0.662 31 H 0.060 0.940 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -7.562 -3.410 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.402 4.402 2 C 0.027 3.973 3 C -0.540 4.540 4 H 0.077 0.923 5 C -0.182 4.182 6 N -0.459 5.459 7 Si 0.788 3.212 8 H -0.198 1.198 9 H -0.190 1.190 10 H -0.186 1.186 11 C -0.105 4.105 12 C -0.118 4.118 13 H 0.063 0.937 14 C -0.148 4.148 15 C -0.189 4.189 16 C -0.074 4.074 17 N -0.322 5.322 18 C -0.054 4.054 19 H 0.064 0.936 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.534 -7.785 -3.691 10.240 hybrid contribution 0.771 1.417 0.570 1.711 sum 6.305 -6.368 -3.120 9.489 Atomic orbital electron populations 1.23087 0.95080 0.96224 1.25835 1.18727 0.93189 0.92684 0.92692 1.19395 1.01895 0.94904 1.37789 0.92338 1.26597 0.94949 1.04077 0.92555 1.69925 1.20044 1.31488 1.24457 0.85521 0.79107 0.77304 0.79270 1.19839 1.19048 1.18561 1.20582 0.98502 0.95345 0.96106 1.21523 0.97307 0.97111 0.95839 0.93720 1.21625 0.99211 0.96368 0.97591 1.22217 0.98917 1.02285 0.95444 1.22126 0.91953 0.92313 1.01020 1.60709 1.48029 1.07492 1.15979 1.21858 0.95930 0.99834 0.87788 0.93598 0.92376 0.91458 0.93055 0.93161 0.91854 0.91605 0.89371 0.92484 0.91070 0.89188 0.84450 0.92161 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -20.53 11.58 67.08 0.78 -19.75 16 2 C 0.03 1.54 4.39 -20.16 -0.09 1.45 16 3 C -0.51 -28.58 9.04 23.22 0.21 -28.37 16 4 H 0.06 3.18 7.90 -2.91 -0.02 3.16 16 5 C 0.03 1.67 5.13 85.37 0.44 2.11 16 6 N -0.83 -47.38 10.99 21.89 0.24 -47.14 16 7 Si 0.97 41.50 29.59 68.60 2.03 43.53 16 8 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 C -0.07 -2.96 4.83 29.84 0.14 -2.81 16 12 C -0.10 -3.77 2.33 -10.74 -0.02 -3.80 16 13 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -3.26 5.29 30.68 0.16 -3.10 16 15 C -0.15 -3.65 6.08 30.65 0.19 -3.46 16 16 C 0.06 1.41 6.55 86.33 0.57 1.97 16 17 N -0.69 -23.06 6.87 -514.01 -3.53 -26.59 16 18 C 0.08 2.99 5.45 86.33 0.47 3.46 16 19 H 0.05 2.46 8.06 -2.91 -0.02 2.44 16 20 H 0.06 3.60 6.27 -2.91 -0.02 3.58 16 21 H 0.28 14.51 8.29 -92.70 -0.77 13.74 16 22 H 0.05 2.16 8.12 -2.39 -0.02 2.14 16 23 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.34 11.15 8.86 -89.69 -0.79 10.36 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.60 6.57 -2.39 -0.02 2.58 16 Total: -1.00 -60.83 256.68 1.86 -58.96 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.28 Total: 23.52 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 2.84 Total: -52.29 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -3.29 Total: -73.73 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -60.83 1.86 -58.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.260 kcal (2) G-P(sol) polarization free energy of solvation -60.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds