Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 C 1.50702 * 109.47256 * 239.99833 * 2 1 3 5 5 H 1.08003 * 120.00157 * 239.99938 * 4 2 1 6 6 C 1.37877 * 119.99736 * 60.00544 * 4 2 1 7 7 N 1.31508 * 120.00039 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47211 * 89.99134 * 8 6 4 10 10 H 1.48498 * 109.47340 * 209.99632 * 8 6 4 11 11 H 1.48502 * 109.46515 * 329.99677 * 8 6 4 12 12 C 1.53000 * 109.47068 * 120.00024 * 2 1 3 13 13 H 1.08997 * 115.58485 * 39.93907 * 12 2 1 14 14 C 1.53151 * 117.51689 * 185.73232 * 12 2 1 15 15 C 1.52279 * 59.88328 * 107.45712 * 14 12 2 16 16 C 1.53621 * 121.48154 * 110.79812 * 15 14 12 17 17 C 1.54559 * 104.75384 * 143.71576 * 16 15 14 18 18 N 1.48614 * 104.64490 * 23.76086 * 17 16 15 19 19 C 1.48725 * 104.35796 * 320.91010 * 18 17 16 20 20 H 1.09004 * 109.47059 * 53.80489 * 1 2 3 21 21 H 1.09003 * 109.47688 * 173.80488 * 1 2 3 22 22 H 1.08998 * 109.47529 * 293.80484 * 1 2 3 23 23 H 0.97008 * 120.00330 * 180.02562 * 7 6 4 24 24 H 1.08995 * 117.51924 * 359.97438 * 14 12 2 25 25 H 1.09005 * 117.51360 * 214.91927 * 14 12 2 26 26 H 1.08999 * 110.38378 * 262.53547 * 16 15 14 27 27 H 1.09003 * 110.38383 * 24.89693 * 16 15 14 28 28 H 1.09000 * 110.40135 * 142.54976 * 17 16 15 29 29 H 1.08997 * 110.40736 * 264.96278 * 17 16 15 30 30 H 1.00892 * 111.00129 * 80.55364 * 18 17 16 31 31 H 1.08998 * 110.45605 * 280.10258 * 19 18 17 32 32 H 1.08998 * 110.45094 * 157.54918 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 6 2.0399 -0.7213 1.2492 13 1 1.4861 -1.6153 1.5356 14 6 3.5499 -0.7121 1.5047 15 6 2.6238 0.1339 2.3681 16 6 2.3756 -0.2024 3.8463 17 6 2.2552 1.1698 4.5473 18 7 1.8475 2.1080 3.4693 19 6 2.6297 1.6690 2.2830 20 1 -0.3633 0.6069 -0.8294 21 1 -0.3634 -1.0217 -0.1109 22 1 -0.3634 0.4148 0.9402 23 1 0.7082 1.1610 -3.4844 24 1 4.1797 -0.1926 0.7825 25 1 3.9893 -1.6005 1.9583 26 1 1.4502 -0.7677 3.9569 27 1 3.2158 -0.7645 4.2540 28 1 1.4941 1.1328 5.3268 29 1 3.2159 1.4677 4.9671 30 1 0.8562 2.0461 3.2919 31 1 3.6497 2.0494 2.3373 32 1 2.1467 2.0013 1.3641 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260258634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = 14.517238 kcal Electronic energy + Delta-G solvation = -12640.334116 eV Core-core repulsion = 10600.925714 eV Total energy + Delta-G solvation = -2039.408402 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.06552 -35.25395 -32.95319 -30.05026 -28.73164 -25.72190 -24.93699 -22.15178 -21.69167 -19.51684 -17.87871 -16.57680 -15.72702 -14.76233 -14.35373 -13.56819 -13.50686 -13.25679 -12.72193 -12.01389 -11.69560 -11.31830 -11.27234 -11.01217 -10.86571 -10.74988 -10.45292 -10.37387 -10.01743 -9.57128 -9.29237 -8.83935 -8.47067 -8.33409 -8.30424 -5.95950 -4.00776 3.31577 3.38460 3.41604 4.38583 4.50277 4.65410 5.06033 5.33542 5.34746 5.40693 5.57743 5.79065 5.89374 6.04613 6.08873 6.22846 6.39765 6.43813 6.45825 6.59389 6.76319 6.90959 6.96589 7.03884 7.26309 7.37590 7.63301 7.76352 8.01730 8.13913 8.49106 9.02465 9.63268 11.10314 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.059338 B = 0.009652 C = 0.009116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.758403 B = 2900.314428 C = 3070.835150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.066 3.934 3 H 0.033 0.967 4 C -0.505 4.505 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.098 4.098 13 H 0.083 0.917 14 C -0.158 4.158 15 C -0.180 4.180 16 C -0.119 4.119 17 C 0.042 3.958 18 N -0.671 5.671 19 C 0.072 3.928 20 H 0.078 0.922 21 H 0.025 0.975 22 H 0.004 0.996 23 H 0.259 0.741 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.337 0.663 31 H 0.072 0.928 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 -0.694 9.547 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.051 0.949 4 C -0.543 4.543 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.117 4.117 13 H 0.101 0.899 14 C -0.196 4.196 15 C -0.181 4.181 16 C -0.158 4.158 17 C -0.088 4.088 18 N -0.296 5.296 19 C -0.057 4.057 20 H 0.097 0.903 21 H 0.044 0.956 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.091 0.909 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.156 0.049 9.621 9.860 hybrid contribution -0.085 -1.539 -1.143 1.919 sum 2.072 -1.489 8.478 8.854 Atomic orbital electron populations 1.21738 0.98650 0.99735 0.98721 1.18380 0.92269 0.95331 0.89191 0.94873 1.21138 1.30752 1.12189 0.90267 0.92681 1.24960 0.95239 0.95032 0.98891 1.69896 1.37017 1.23007 1.23203 0.86640 0.79234 0.79423 0.82969 1.20826 1.21317 1.19994 1.22642 0.94166 0.98681 0.96177 0.89912 1.22751 0.94870 1.00302 1.01640 1.22493 1.08606 0.95076 0.91974 1.22310 1.01178 0.98230 0.94073 1.22964 1.00945 0.90151 0.94761 1.63357 1.10396 1.49624 1.06251 1.22510 0.98721 0.90665 0.93801 0.90313 0.95563 0.97670 0.93121 0.88709 0.90537 0.91998 0.91813 0.91542 0.90848 0.84848 0.90944 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.88 37.15 0.33 -2.82 16 2 C 0.07 1.63 2.21 -91.78 -0.20 1.42 16 3 H 0.03 0.87 5.71 -51.93 -0.30 0.58 16 4 C -0.51 -13.74 8.35 -34.44 -0.29 -14.03 16 5 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.47 11.39 55.43 0.63 -24.84 16 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 C -0.10 -2.04 4.90 -90.82 -0.44 -2.49 16 13 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 14 C -0.16 -2.98 9.78 -27.02 -0.26 -3.25 16 15 C -0.18 -3.19 2.51 -154.45 -0.39 -3.57 16 16 C -0.12 -1.76 6.77 -25.59 -0.17 -1.93 16 17 C 0.04 0.57 7.48 -2.06 -0.02 0.55 16 18 N -0.67 -10.50 7.62 -109.75 -0.84 -11.33 16 19 C 0.07 1.27 7.03 -2.42 -0.02 1.25 16 20 H 0.08 2.08 6.26 -51.93 -0.33 1.76 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 24 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.34 5.13 8.92 -39.30 -0.35 4.78 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.76 5.78 -51.93 -0.30 1.46 16 LS Contribution 257.21 15.07 3.88 3.88 Total: -1.00 -27.71 257.21 -7.95 -35.66 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.04 Total: 3.60 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.56 Total: -23.31 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.21 Total: -36.17 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.71 -7.95 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.172 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds