Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 C 1.50693 * 109.47016 * 240.00463 * 2 1 3 5 5 H 1.07998 * 120.00275 * 242.34233 * 4 2 1 6 6 C 1.37877 * 120.00207 * 62.33455 * 4 2 1 7 7 N 1.31519 * 119.99980 * 356.95749 * 6 4 2 8 8 Si 1.86804 * 120.00142 * 176.94845 * 6 4 2 9 9 H 1.48497 * 109.47220 * 94.99837 * 8 6 4 10 10 H 1.48498 * 109.47188 * 215.00094 * 8 6 4 11 11 H 1.48499 * 109.47102 * 334.99564 * 8 6 4 12 12 C 1.52998 * 109.47121 * 120.00270 * 2 1 3 13 13 H 1.09000 * 115.58563 * 78.25921 * 12 2 1 14 14 C 1.53145 * 117.51672 * 224.04686 * 12 2 1 15 15 C 1.52301 * 117.51914 * 292.46840 * 12 2 1 16 16 C 1.54161 * 121.22898 * 2.98900 * 15 12 2 17 17 C 1.55089 * 102.62328 * 165.47915 * 16 15 12 18 18 N 1.48593 * 103.48987 * 323.36944 * 17 16 15 19 19 C 1.48087 * 105.86917 * 38.75427 * 18 17 16 20 20 H 1.09007 * 109.46915 * 309.78517 * 1 2 3 21 21 H 1.08994 * 109.47468 * 69.78192 * 1 2 3 22 22 H 1.09002 * 109.47201 * 189.78989 * 1 2 3 23 23 H 0.97001 * 119.99711 * 179.97438 * 7 6 4 24 24 H 1.09003 * 117.51373 * 0.02562 * 14 12 2 25 25 H 1.09005 * 117.55429 * 214.85869 * 14 12 2 26 26 H 1.09004 * 110.69528 * 47.25311 * 16 15 12 27 27 H 1.08996 * 110.91261 * 283.81174 * 16 15 12 28 28 H 1.09004 * 110.64063 * 204.82068 * 17 16 15 29 29 H 1.09002 * 110.64653 * 81.91655 * 17 16 15 30 30 H 1.00904 * 110.99490 * 278.21267 * 18 17 16 31 31 H 1.09002 * 110.00609 * 94.11584 * 19 18 17 32 32 H 1.09001 * 110.00621 * 215.42637 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6216 -1.6099 -1.1320 6 6 1.7394 -0.2117 -2.4821 7 7 0.9720 0.8493 -2.6043 8 14 2.4328 -1.0432 -4.0045 9 1 1.4352 -2.0027 -4.5422 10 1 2.7374 -0.0169 -5.0337 11 1 3.6772 -1.7708 -3.6477 12 6 2.0400 -0.7213 1.2492 13 1 2.0083 -1.8101 1.2100 14 6 3.1963 -0.0744 2.0173 15 6 1.7879 -0.0582 2.5969 16 6 0.9874 1.2549 2.7043 17 6 0.6680 1.3342 4.2199 18 7 0.4280 -0.0826 4.5981 19 6 1.4211 -0.8779 3.8402 20 1 -0.3633 0.6577 0.7898 21 1 -0.3634 0.3551 -0.9643 22 1 -0.3634 -1.0127 0.1747 23 1 0.7662 1.2002 -3.4849 24 1 3.5931 0.8652 1.6326 25 1 3.9252 -0.7372 2.4836 26 1 0.0700 1.1957 2.1186 27 1 1.5923 2.1060 2.3917 28 1 -0.2248 1.9350 4.3935 29 1 1.5163 1.7406 4.7707 30 1 -0.5130 -0.3641 4.3669 31 1 2.3082 -1.0463 4.4508 32 1 0.9864 -1.8324 3.5435 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260258640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = 17.532059 kcal Electronic energy + Delta-G solvation = -12629.199664 eV Core-core repulsion = 10589.921994 eV Total energy + Delta-G solvation = -2039.277670 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.10383 -35.30459 -32.99931 -29.91347 -28.86380 -25.97435 -24.90499 -22.09057 -21.49818 -19.74385 -18.02899 -16.30780 -15.94414 -14.74902 -14.56919 -13.83026 -13.48713 -12.94494 -12.43352 -12.14423 -11.87394 -11.55610 -11.17907 -11.02860 -10.88037 -10.71200 -10.46035 -10.30603 -10.06315 -9.64628 -9.15028 -8.91100 -8.52363 -8.38155 -8.21472 -5.96858 -4.03116 3.30328 3.37500 3.41294 4.40166 4.50756 4.51638 5.03741 5.32222 5.33827 5.43561 5.62182 5.73155 5.87131 5.96998 6.17525 6.22665 6.32171 6.35974 6.44669 6.65279 6.76493 6.84943 6.95407 7.08505 7.26354 7.40112 7.53147 7.74128 8.00068 8.16909 8.49386 9.00424 9.61220 11.08412 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.066067 B = 0.009192 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.710889 B = 3045.346870 C = 3219.173999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.026 0.974 4 C -0.507 4.507 5 H 0.054 0.946 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.096 4.096 13 H 0.088 0.912 14 C -0.168 4.168 15 C -0.172 4.172 16 C -0.126 4.126 17 C 0.043 3.957 18 N -0.676 5.676 19 C 0.080 3.920 20 H 0.016 0.984 21 H 0.081 0.919 22 H 0.019 0.981 23 H 0.259 0.741 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.334 0.666 31 H 0.070 0.930 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -0.415 9.311 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.055 3.945 3 H 0.044 0.956 4 C -0.545 4.545 5 H 0.072 0.928 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.205 4.205 15 C -0.173 4.173 16 C -0.164 4.164 17 C -0.087 4.087 18 N -0.302 5.302 19 C -0.049 4.049 20 H 0.035 0.965 21 H 0.100 0.900 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.149 0.851 31 H 0.088 0.912 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.085 -0.294 9.851 9.856 hybrid contribution 0.126 -0.385 -1.879 1.922 sum 0.041 -0.679 7.972 8.001 Atomic orbital electron populations 1.21928 0.98798 0.97456 1.01379 1.18268 0.92198 0.94991 0.89054 0.95605 1.21194 1.32318 1.10487 0.90548 0.92766 1.24966 0.95175 0.95132 0.98924 1.69898 1.36744 1.23234 1.23210 0.86616 0.79436 0.79173 0.83005 1.20848 1.21241 1.19908 1.22680 0.98846 0.98225 0.91666 0.89421 1.22925 0.90282 1.02824 1.04449 1.22313 0.99773 0.98471 0.96743 1.22789 1.00969 0.96171 0.96449 1.23095 1.00976 0.90154 0.94459 1.62865 1.07322 1.03498 1.56564 1.22107 0.95814 0.95678 0.91333 0.96501 0.90003 0.96169 0.93125 0.89371 0.90163 0.89621 0.91370 0.91350 0.90797 0.85119 0.91187 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.87 37.16 0.33 -2.99 16 2 C 0.07 1.82 1.89 -91.77 -0.17 1.65 16 3 H 0.03 0.70 7.95 -51.93 -0.41 0.29 16 4 C -0.51 -13.99 8.53 -34.44 -0.29 -14.28 16 5 H 0.05 1.48 7.75 -52.49 -0.41 1.08 16 6 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 7 N -0.89 -25.62 11.35 55.43 0.63 -24.99 16 8 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C -0.10 -2.00 4.86 -90.90 -0.44 -2.44 16 13 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 14 C -0.17 -3.09 9.92 -27.01 -0.27 -3.36 16 15 C -0.17 -3.02 2.37 -154.42 -0.37 -3.38 16 16 C -0.13 -2.10 6.01 -25.02 -0.15 -2.25 16 17 C 0.04 0.60 7.55 -1.78 -0.01 0.58 16 18 N -0.68 -9.67 7.52 -110.16 -0.83 -10.50 16 19 C 0.08 1.23 7.30 -2.97 -0.02 1.21 16 20 H 0.02 0.36 4.87 -51.93 -0.25 0.10 16 21 H 0.08 2.20 5.96 -51.93 -0.31 1.89 16 22 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.09 1.54 4.93 -51.93 -0.26 1.28 16 27 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.33 4.40 8.92 -39.29 -0.35 4.05 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 254.20 15.07 3.83 3.83 Total: -1.00 -28.14 254.20 -7.81 -35.94 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.92 Total: 3.05 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -1.49 Total: -23.72 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.20 Total: -35.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.14 -7.81 -35.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.477 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds